Package index • oce

CTD data

Functions related to working with CTD data

CTD_BCD2014666_008_1_DN.ODF.gz: Sample ctd File in .odf Format

argo2ctd(): Coerce argo Data Into a ctd Object

as.ctd(): Coerce Data Into a ctd Object

cnvName2oceName(): Infer Variable Name, Units and Scale From a Seabird Header

ctd-class: Class to Store CTD (or general hydrographic) Data

ctd: Sample ctd Data

ctd.cnv.gz: Sample ctd File in .cnv Format

ctdDecimate(): Decimate a ctd Profile

ctdFindProfiles(): Find Profiles Within a Tow-Yow ctd Record

ctdFindProfilesRBR(): Find Profiles Within a ctd Object Read From a RBR File

ctdRaw: Sample ctd Data, Not Trimmed of Extraneous Data

ctdRepair(): Repair a Malformed ctd Object

ctdTrim(): Trim Beginning and Ending of a CTD cast

ctd_aml_type1.csv.gz: Sample ctd File in aml Format 1

ctd_aml_type3.csv.gz: Sample ctd File in aml Format 3

d200321-001.ctd.gz: Sample ctd File in .ctd Format

d201211_0011.cnv.gz: Sample ctd File in .cnv Format

handleFlags(<ctd>): Handle Flags in ctd Objects

initialize(<ctd>): Initialize Storage for a ctd Object

initializeFlagScheme(<ctd>): Establish a Data-Quality Scheme for a ctd Object

oceNames2whpNames(): Translate Oce Data Names to WHP Data Names

oceUnits2whpUnits(): Translate oce Unit to WHP Unit

plot(<ctd>): Plot a ctd Object

plotProfile(): Plot a ctd Profile

plotScan(): Plot a ctd Object in a Low-Level Fashion

plotTS(): Plot Temperature-Salinity Diagram

read.ctd(): Read a ctd File in General Format

read.ctd.aml(): Read a ctd File in AML Format

read.ctd.itp(): Read a ctd File in ITP Format

read.ctd.odf(): Read a ctd File in odf Format

read.ctd.odv(): Read a "ctd" File in ODV Format

read.ctd.saiv(): Read a ctd File in SAIV Format

read.ctd.sbe(): Read a ctd File in Seabird Format

read.ctd.ssda(): Read a ctd File in SSDA Format

read.ctd.woce(): Read a ctd File in WOCE-Exchange Format

read.ctd.woce.other(): Read a ctd File in WOCE-Exchange EXPOCODE Format

setFlags(<ctd>): Set Data-Quality Flags within a ctd Object

`[[`(<ctd>): Extract Something From a ctd Object

`[[<-`(<ctd>): Replace Parts of a ctd Object

subset(<ctd>): Subset a ctd Object

summary(<ctd>): Summarize a ctd Object

woceNames2oceNames(): Translate WOCE Data Names to Oce Data Names

woceUnit2oceUnit(): Translate WOCE Units to oce Units

write.ctd(): Save a ctd Object in a CSV File

Acoustic Doppler data

Functions related to acoustic Doppler instruments and data

ad2cpCodeToName(): Map AD2CP ID Code to oce Name

ad2cpHeaderValue(): Infer an Item From a Nortek AD2CP File Header

adp-class: Class to Store Acoustic-Doppler Profiler Data

adp: Sample adp Data

adpAd2cpFileTrim(): Trim an AD2CP File

adpConvertRawToNumeric(): Convert Raw to Numeric Values in an adp Object

adpEnsembleAverage(): Ensemble Average an adp Object in Time

adpFlagPastBoundary(): Flag adp Data Past Water Column Boundary

adpRdiFileTrim(): Trim an RDI adp File

adp_rdi.000: Sample adp File in RDI Format

applyMagneticDeclination(<adp>): Alter an adp Object to Account for Magnetic Declination

as.adp(): Create an adp Object

beamName(): Get Names of Acoustic-Doppler Beams

beamToXyz(): Change the Coordinate System in an adv or adp Object

beamToXyzAdp(): Convert adp Object From Beam to XYZ Coordinates

beamToXyzAdpAD2CP(): Convert From Beam to XYZ Coordinates (AD2CP adp Data)

beamToXyzAdv(): Convert adv Object from Beam Coordinates to XYZ Coordinates

beamUnspreadAdp(): Adjust adp Object to Account for Spherical Spreading

binmapAdp(): Bin-map an adp Object

enuToOther(): Rotate Acoustic-Doppler Data to a New Coordinate System

enuToOtherAdp(): Convert adp Object from ENU Coordinate to Rotated Coordinate

handleFlags(<adp>): Handle Flags in adp Objects

is.ad2cp(): Test Whether Item is a ad2cp-Type adp Object

plot(<adp>): Plot an adp Object

read.adp(): Read an adp File

read.adp.ad2cp(): Read an adp File in Nortek AD2CP Format

read.adp.nortek(): Read an adp File in Nortek Format

read.adp.rdi(): Read an adp File in Teledyne/RDI Format

read.adp.sontek(): Read an adp File in Sontek Format

read.adp.sontek.serial(): Read an adp File in Serial Sontek Format

read.aquadopp(): Read an adp File in Nortek Aquadopp Format

read.aquadoppHR(): Read Nortek Aquadopp-HR File

read.aquadoppProfiler(): Read an adp File in Nortek Aquadopp Format

rotateAboutZ(): Rotate Velocity Components Within an oce Object

setFlags(<adp>): Set Data-Quality Flags within a adp Object

`[[`(<adp>): Extract Something From an adp Object

`[[<-`(<adp>): Replace Parts of an adp Object

subset(<adp>): Subset an adp Object

subtractBottomVelocity(): Subtract Bottom Velocity From an adp Object

summary(<adp>): Summarize an adp Object

toEnu(): Rotate Acoustic-Doppler Data to the ENU Coordinate System

toEnuAdp(): Convert an adp Object to ENU Coordinates

velocityStatistics(): Report Statistics of adp or adv Velocities

xyzToEnu(): Convert Acoustic-Doppler Data From XYZ to ENU Coordinates

xyzToEnuAdp(): Convert adp Object From XYZ to ENU Coordinates

xyzToEnuAdpAD2CP(): Convert adp Object of AD2CP type From XYZ to ENU Coordinates

adv-class: Class to Store Acoustic-Doppler Velocimeter Data

adv: Sample adv Data

advSontekAdrFileTrim(): Trim a Sontek ADR adv File

applyMagneticDeclination(<adv>): Alter an adv Object to Account for Magnetic Declination

enuToOtherAdv(): Convert ENU to Other Coordinate

plot(<adv>): Plot an adv Object

read.adv(): Read an adv File

read.adv.nortek(): Read an adv File

read.adv.sontek.adr(): Read an adv File

read.adv.sontek.serial(): Read an adv File

read.adv.sontek.text(): Read an adv File

`[[`(<adv>): Extract Something from an adv Object

`[[<-`(<adv>): Replace Parts of an adv Object

subset(<adv>): Subset an adv Object

summary(<adv>): Summarize an adv Object

toEnuAdv(): Convert an adv Object to ENU Coordinates

xyzToEnuAdv(): Convert an adv Object From XYZ to ENU Coordinates

Argo float data and tools

Functions for working with Argo data

D4902337_219.nc: Sample Argo Profile File

argo-class: Class to Store Argo Profiler Data

argo: Sample argo Data

argo2ctd(): Coerce argo Data Into a ctd Object

argoGrid(): Grid Argo Float Data

argoNames2oceNames(): Convert Argo Data Name to Oce Name

as.argo(): Coerce Data Into an argo Object

handleFlags(<argo>): Handle Flags in argo Objects

plot(<argo>): Plot an argo Object

read.argo(): Read an Argo Data File

read.argo.copernicus(): Read an argo File in Copernicus Format

`[[`(<argo>): Extract Something From an argo Object

`[[<-`(<argo>): Replace Parts of an argo Object

subset(<argo>): Subset an argo Object

summary(<argo>): Summarize an argo Object

Seawater properties

Functions for calculating seawater properties

T68fromT90(): Convert From ITS-90 to IPTS-68 Temperature

T90fromT48(): Convert From ITS-48 to ITS-90 Temperature

T90fromT68(): Convert From IPTS-68 to ITS-90 Temperature

computableWaterProperties(): Determine Available Derived Water Properties

locationForGsw(): Alter Longitude and Latitude for gsw Computations

swAbsoluteSalinity(): Seawater Absolute Salinity (GSW Formulation)

swAlpha(): Seawater Thermal Expansion Coefficient

swAlphaOverBeta(): Ratio of Seawater Thermal Expansion Coefficient to Haline Contraction Coefficient

swBeta(): Seawater Haline Contraction Coefficient

swCSTp(): Electrical Conductivity Ratio From Salinity, Temperature and Pressure

swConservativeTemperature(): Seawater Conservative Temperature (GSW Formulation)

swDepth(): Water Depth

swDynamicHeight(): Dynamic Height of a Seawater Profile

swLapseRate(): Seawater Lapse Rate

swN2(): Squared Buoyancy Frequency for Seawater

swPressure(): Water Pressure

swRho(): Seawater Density

swRrho(): Density Ratio

swSCTp(): Practical Salinity From Electrical Conductivity, Temperature and Pressure

swSR(): Seawater Reference Salinity (GSW Formulation)

swSTrho(): Seawater Salinity From Temperature and Density

swSigma(): Seawater Density Anomaly

swSigma0(): Seawater Potential Density Anomaly Referenced to Surface Pressure

swSigma1(): Seawater Potential Density Anomaly Referenced to 1000db Pressure

swSigma2(): Seawater Potential Density Anomaly Referenced to 2000db Pressure

swSigma3(): Seawater Potential Density Anomaly Referenced to 3000db Pressure

swSigma4(): Seawater Potential Density Anomaly Referenced to 4000db Pressure

swSigmaT(): Seawater Quasi-Potential Density Anomaly

swSigmaTheta(): Seawater Potential Density Anomaly

swSoundAbsorption(): Seawater Sound Absorption

swSoundSpeed(): Seawater Sound Speed

swSpecificHeat(): Seawater Specific Heat

swSpice(): Seawater Spiciness

swSpiciness0(): Spiciness in gsw System, Referenced to Surface Pressure

swSpiciness1(): Spiciness in gsw System, Referenced to 1000 dbar Pressure

swSpiciness2(): Spiciness in gsw System, Referenced to 2000 dbar Pressure

swSstar(): Seawater Preformed Salinity (GSW Formulation)

swTFreeze(): Seawater Freezing Temperature

swTSrho(): Seawater Temperature from Salinity and Density

swThermalConductivity(): Seawater Thermal Conductivity

swTheta(): Seawater Potential Temperature (UNESCO Version)

swViscosity(): Seawater Viscosity

swZ(): Vertical Coordinate

Data quality flags

Functions for working with data quality flags

defaultFlags(): Suggest a Default Flag Vector for Bad or Suspicious Data

handleFlags(<adp>): Handle Flags in adp Objects

handleFlags(<argo>): Handle Flags in argo Objects

handleFlags(<ctd>): Handle Flags in ctd Objects

handleFlags(<oce>): Handle Flags in oce Objects

handleFlags(<section>): Handle flags in section Objects

handleFlags(): Handle Flags in oce Objects (Generic)

initializeFlagScheme(<ctd>): Establish a Data-Quality Scheme for a ctd Object

initializeFlagScheme(<oce>): Establish a Data-Quality Scheme for a oce Object

initializeFlagScheme(<section>): Establish a Data-Quality Scheme for a section Object

initializeFlagScheme(): Establish a Data-Quality Scheme for a oce Object

initializeFlagSchemeInternal(): Establish a Data-Quality Scheme for a oce Object

initializeFlags(<adp>): Create and Initialize adp Flags

initializeFlags(<oce>): Create and Initialize oce Flags

initializeFlags(): Create and Initialize oce Flags

initializeFlagsInternal(): Create and Initialize oce Flags

setFlags(<adp>): Set Data-Quality Flags within a adp Object

setFlags(<ctd>): Set Data-Quality Flags within a ctd Object

setFlags(<oce>): Set Data-Quality Flags within a oce Object

setFlags(): Set Data-Quality Flags within a oce Object

All functions

CTD_BCD2014666_008_1_DN.ODF.gz: Sample ctd File in .odf Format

D4902337_219.nc: Sample Argo Profile File

GMTOffsetFromTz(): Determine Time Offset From Timezone

ODF2oce(): Create ODF Object From Output of read_ODF in ODF package

ODFListFromHeader(): Create a List of odf Header Metadata

ODFNames2oceNames(): Translate ODF CODE Strings to oce Variable Names

T68fromT90(): Convert From ITS-90 to IPTS-68 Temperature

T90fromT48(): Convert From ITS-48 to ITS-90 Temperature

T90fromT68(): Convert From IPTS-68 to ITS-90 Temperature

abbreviateTimeLabels(): Abbreviate a Vector of Times by Removing Commonalities

ad2cpCodeToName(): Map AD2CP ID Code to oce Name

ad2cpHeaderValue(): Infer an Item From a Nortek AD2CP File Header

addSpine(): Add a Spine to a section Object

adp-class: Class to Store Acoustic-Doppler Profiler Data

adp: Sample adp Data

adpAd2cpFileTrim(): Trim an AD2CP File

adpConvertRawToNumeric(): Convert Raw to Numeric Values in an adp Object

adpEnsembleAverage(): Ensemble Average an adp Object in Time

adpFlagPastBoundary(): Flag adp Data Past Water Column Boundary

adpRdiFileTrim(): Trim an RDI adp File

adp_rdi.000: Sample adp File in RDI Format

adv-class: Class to Store Acoustic-Doppler Velocimeter Data

adv: Sample adv Data

advSontekAdrFileTrim(): Trim a Sontek ADR adv File

airRho(): Air Density

amsr-class: Class to Store AMSR-2 Satellite Data

amsr: Sample amsr Data (Near Nova Scotia)

angle2hms(): Convert Astronomical Angle in Degrees to Hours, Minutes and Seconds

angleRemap(): Convert Angle From 0:360 to -180:180 Convention

applyMagneticDeclination(<adp>): Alter an adp Object to Account for Magnetic Declination

applyMagneticDeclination(<adv>): Alter an adv Object to Account for Magnetic Declination

applyMagneticDeclination(<cm>): Alter a cm Object to Account for Magnetic Declination

applyMagneticDeclination(<oce>): Alter an Object to Account for Magnetic Declination

applyMagneticDeclination(): Alter an Object to Account for Magnetic Declination (Generic)

approx3d(): Trilinear Interpolation in a 3D Array

argShow(): Show a Function Argument

argo-class: Class to Store Argo Profiler Data

argo: Sample argo Data

argo2ctd(): Coerce argo Data Into a ctd Object

argoGrid(): Grid Argo Float Data

argoJuldToTime(): Convert Argo Julian Day to R Time

argoNames2oceNames(): Convert Argo Data Name to Oce Name

as.adp(): Create an adp Object

as.argo(): Coerce Data Into an argo Object

as.cm(): Coerce Data Into a cm Object

as.coastline(): Coerce Data Into a coastline Object

as.ctd(): Coerce Data Into a ctd Object

as.echosounder(): Coerce Data Into an echosounder Object

as.gps(): Coerce Data Into a gps Object

as.ladp(): Coerce Data Into an ladp object

as.lisst(): Coerce Data Into a lisst Object

as.lobo(): Coerce Data Into a lobo Object

as.met(): Coerce Data Into a met Object

as.oce(): Coerce Something Into an oce Object

as.rsk(): Coerce Data Into a rsk Object

as.sealevel(): Coerce Data Into a sealevel Object

as.section(): Create a Section

as.tidem(): Create tidem Object From Fitted Harmonic Data

as.topo(): Coerce Data Into a topo Object

as.unit(): Convert a String to a Unit

as.windrose(): Create a windrose Object

as.xbt(): Create an xbt Object

bcdToInteger(): Convert a BCD Value to an Integer Value

beamName(): Get Names of Acoustic-Doppler Beams

beamToXyz(): Change the Coordinate System in an adv or adp Object

beamToXyzAdp(): Convert adp Object From Beam to XYZ Coordinates

beamToXyzAdpAD2CP(): Convert From Beam to XYZ Coordinates (AD2CP adp Data)

beamToXyzAdv(): Convert adv Object from Beam Coordinates to XYZ Coordinates

beamUnspreadAdp(): Adjust adp Object to Account for Spherical Spreading

bilinearInterp(): Bilinear Interpolation Within a Grid

binApply1D(): Apply a Function to Vector Data

binApply2D(): Apply a Function to Matrix Data

binAverage(): Bin-average a Vector y, Based on x Values

binCount1D(): Bin-count Vector Data

binCount2D(): Bin-count Matrix Data

binMean1D(): Bin-average f=f(x)

binMean2D(): Bin-average f=f(x,y)

binmapAdp(): Bin-map an adp Object

bodcNames2oceNames(): Determine oce Variable Names from an NERC/BODC Names

bound125(): Calculate a Bound, Rounded up to Mantissa 1, 2, or 5

bremen-class: Class to Store Bremen-formatted Data

byteToBinary(): Format Bytes as Binary (Defunct)

cm-class: Class to Store Current Meter Data

cm: Sample cm Data

cnvName2oceName(): Infer Variable Name, Units and Scale From a Seabird Header

coastline-class: Class to Store Coastline Data

coastlineBest(): Find the Name of the Best Coastline Object

coastlineCut(): Cut a Coastline Object at Specified Longitude

coastlineWorld: Sample coastline Data (Global, at 1:110M scale)

colormap(): Calculate a Color Map

colormapGMT(): Create a GMT-type (CPT) Colormap

composite(<amsr>): Create a Composite of amsr Satellite Data

composite(<list>): Composite by Averaging Across Data

composite(): Create a Composite Object by Averaging Across Good Data

computableWaterProperties(): Determine Available Derived Water Properties

concatenate(<adp>): Concatenate adp Objects

concatenate(<list>): Concatenate a List of oce Objects

concatenate(<oce>): Concatenate oce Objects (oce-Specific)

concatenate(): Concatenate oce Objects (Generic)

coriolis(): Coriolis Parameter on the Earth

ctd-class: Class to Store CTD (or general hydrographic) Data

ctd: Sample ctd Data

ctd.cnv.gz: Sample ctd File in .cnv Format

ctdDecimate(): Decimate a ctd Profile

ctdFindProfiles(): Find Profiles Within a Tow-Yow ctd Record

ctdFindProfilesRBR(): Find Profiles Within a ctd Object Read From a RBR File

ctdRaw: Sample ctd Data, Not Trimmed of Extraneous Data

ctdRepair(): Repair a Malformed ctd Object

ctdTrim(): Trim Beginning and Ending of a CTD cast

ctd_aml_type1.csv.gz: Sample ctd File in aml Format 1

ctd_aml_type3.csv.gz: Sample ctd File in aml Format 3

ctimeToSeconds(): Interpret a Character String as a Time Interval

curl(): Curl of 2D Vector Field

d200321-001.ctd.gz: Sample ctd File in .ctd Format

d201211_0011.cnv.gz: Sample ctd File in .cnv Format

dataLabel(): Associate Data Names With Units

decimate(): Smooth and Decimate, or Subsample, an oce Object

decodeHeaderNortek(): Decode a Nortek Header

decodeTime(): Oce Version of as.POSIXct

defaultFlags(): Suggest a Default Flag Vector for Bad or Suspicious Data

despike(): Remove Spikes From a Time Series

detrend(): Detrend a Set of Observations

download.amsr(): Download and Cache an amsr File

download.coastline(): Download a coastline File

download.met(): Download and Cache a met File

download.topo(): Download and Cache a topo File

drawDirectionField(): Draw a Direction Field

drawIsopycnals(): Add Isopycnal Curves to a TS Plot

drawPalette(): Draw a Palette, Leaving Margins Suitable for an Accompanying Plot

echosounder-class: Class to Store Echosounder Data

echosounder: Sample echosounder Data

eclipticalToEquatorial(): Convert Ecliptical Coordinate to Equatorial Coordinate

enuToOther(): Rotate Acoustic-Doppler Data to a New Coordinate System

enuToOtherAdp(): Convert adp Object from ENU Coordinate to Rotated Coordinate

enuToOtherAdv(): Convert ENU to Other Coordinate

equatorialToLocalHorizontal(): Convert Equatorial Coordinate to Local Horizontal Coordinate

errorbars(): Draw Error Bars on an Existing xy Diagram

fillGap(): Fill a Gap in an oce Object

fillGapMatrix(): Fill a Gap in a Matrix

findBottom(): Find the Ocean Bottom in an Echosounder Object

firstFinite(): Get First Finite Value in a Vector or Array.

formatCI(): Format a Confidence Interval

formatPosition(): Format Geographical Position in Degrees and Minutes

fullFilename(): Full Name of File, Including Path

g1sst-class: Class to Store G1SST Satellite/Model Data

gappyIndex(): Create a Possibly Gappy Indexing Vector

geodDist(): Compute Geodesic Distance on Surface of Earth

geodGc(): Great-circle Segments Between Points on Earth

geodXy(): Convert From Geographical to Geodesic Coordinates

geodXyInverse(): Inverse Geodesic Calculation

gps-class: Class to Store GPS Data

grad(): Calculate Matrix Gradient

gravity(): Acceleration Due to Earth Gravity

handleFlags(<adp>): Handle Flags in adp Objects

handleFlags(<argo>): Handle Flags in argo Objects

handleFlags(<ctd>): Handle Flags in ctd Objects

handleFlags(<oce>): Handle Flags in oce Objects

handleFlags(<section>): Handle flags in section Objects

handleFlags(<vector>): Signal Erroneous Application to non-oce Objects

handleFlags(): Handle Flags in oce Objects (Generic)

handleFlagsInternal(): Low-Level Function for Handling Data-Quality Flags

head(<oce>): Extract The Start of an Oce Object

imagep(): Plot an Image with a Color Palette

initialize(<ctd>): Initialize Storage for a ctd Object

initializeFlagScheme(<ctd>): Establish a Data-Quality Scheme for a ctd Object

initializeFlagScheme(<oce>): Establish a Data-Quality Scheme for a oce Object

initializeFlagScheme(<section>): Establish a Data-Quality Scheme for a section Object

initializeFlagScheme(): Establish a Data-Quality Scheme for a oce Object

initializeFlagSchemeInternal(): Establish a Data-Quality Scheme for a oce Object

initializeFlags(<adp>): Create and Initialize adp Flags

initializeFlags(<oce>): Create and Initialize oce Flags

initializeFlags(): Create and Initialize oce Flags

initializeFlagsInternal(): Create and Initialize oce Flags

integerToAscii(): Infer ASCII Code From an Integer Value

integrateTrapezoid(): Trapezoidal Integration

interpBarnes(): Grid Data Using the Barnes Algorithm

is.ad2cp(): Test Whether Item is a ad2cp-Type adp Object

julianCenturyAnomaly(): Convert Julian-Day-Number to Julian Century

julianDay(): Convert a Time to a Julian Day

labelWithUnit(): Create Label With Unit

ladp-class: Class to Store Lowered-adp Data

landsat-class: Class to Store Landsat Satellite Data

landsat: Sample landsat Data

landsatAdd(): Add a Band to a landsat Object

landsatTrim(): Trim a landsat Image to a Geographical Region

latFormat(): Format a Latitude

latlonFormat(): Format a Latitude-Longitude Pair

lisst-class: Class to Store LISST Data

lisst: Sample lisst Data

lobo-class: Class to Store LOBO Data

lobo: Sample lobo Data

locationForGsw(): Alter Longitude and Latitude for gsw Computations

lon360(): Change Longitude From -180:180 to 0:360 Convention

lonFormat(): Format a Longitude

longitudeTighten(): Try to Reduce Section Longitude Range

lonlat2map(): Convert Longitude and Latitude to X and Y

lonlat2utm(): Convert Longitude and Latitude to UTM

lookWithin(): Look Within the First Element of a List for Replacement Values

lowpass(): Lowpass Digital Filtering

magneticField(): Earth Magnetic Declination, Inclination, and Intensity

makeFilter(): Make a Digital Filter

map2lonlat(): Convert X and Y to Longitude and Latitude

mapArrows(): Add Arrows to a Map

mapAxis(): Add Axis Labels to an Existing Map

mapContour(): Add Contours on a Existing map

mapCoordinateSystem(): Draw a Coordinate System

mapDirectionField(): Add a Direction Field to an Existing Map

mapGrid(): Add a Longitude and Latitude Grid to an Existing Map

mapImage(): Add an Image to a Map

mapLines(): Add Lines to a Map

mapLocator(): Locate Points on a Map

mapLongitudeLatitudeXY(): Convert From Longitude and Latitude to X and Y

mapPlot(): Draw a Map

mapPoints(): Add Points to a Map

mapPolygon(): Add a Polygon to a Map

mapScalebar(): Add a Scalebar to a Map

mapText(): Add Text to a Map

mapTissot(): Add Tissot Indicatrices to a Map

matchBytes(): Locate Byte Sequences in a Raw Vector

matrixShiftLongitude(): Rearrange Areal Matrix so Greenwich is Near the Centre

matrixSmooth(): Smooth a Matrix

met-class: Class to Store Meteorological Data

met: Sample met Data

metNames2oceNames(): Convert met Data Name to oce Name

moonAngle(): Lunar Angle as Function of Space and Time

netcdfTOC(): Print an overview of the contents of a NetCDF file

numberAsHMS(): Convert a Numeric Time to Hour, Minute, and Second

numberAsPOSIXct(): Convert a Numeric Time to a POSIXct Time

oce-class: Base Class for oce Objects

oce-deprecated oce-defunct: Deprecated and Defunct Elements of the oce Package

oce.as.raw(): Version of as.raw() That Clips Data

oce.axis.POSIXct(): Oce Version of axis.POSIXct

oce.contour(): Oce Variant of contour

oce.grid(): Add a Grid to an Existing Oce Plot

oce.plot.ts(): Oce Variant of plot.ts

oce.write.table(): Write the Data Portion of Object to a File

oceApprox(): Interpolate 1D Data with UNESCO or Reiniger-Ross Algorithm

oceAxis(): Draw an Axis, Possibly with Decade-style Logarithmic Scaling

oceCRS(): Coordinate Reference System Strings for Some Oceans

oceColors9B(): Create Colors in a Red-Yellow-Blue Color Scheme

oceColorsCDOM(): Create Colors Suitable for CDOM Fields

oceColorsChlorophyll(): Create Colors Suitable for chlorophyll Fields

oceColorsClosure(): Create Color Functions

oceColorsDensity(): Create Colors Suitable for density Fields

oceColorsFreesurface(): Create Colors Suitable for freesurface Fields

oceColorsGebco(): Create Colors in a GEBCO-like Scheme

oceColorsJet(): Create Colors Similar to the Matlab Jet Scheme

oceColorsOxygen(): Create Colors Suitable for oxygen Fields

oceColorsPAR(): Create Colors Suitable for PAR Fields

oceColorsPalette(): Create a Vector of Colors

oceColorsPhase(): Create Colors Suitable for phase Fields

oceColorsSalinity(): Create Colors Suitable for salinity Fields

oceColorsTemperature(): Create Colors Suitable for temperature Fields

oceColorsTurbidity(): Create Colors Suitable for turbidity Fields

oceColorsTurbo(): Create Colors Similar to the Google Turbo Scheme

oceColorsTwo(): Create Two-Color Palette

oceColorsVelocity(): Create Colors Suitable for velocity Fields

oceColorsViridis(): Create Colors Similar to the Matlab Viridis Scheme

oceColorsVorticity(): Create Colors Suitable for vorticity Fields

oceConvolve(): Convolve Two Time Series

oceDebug(): Print a Debugging Message

oceDeleteData(): Delete Something From the data Slot of an oce Object

oceDeleteMetadata(): Delete Something in an oce metadata Slot

oceEdit(): Edit an Oce Object

oceFileTrim(): Trim an oce File

oceFilter(): Filter a Time Series

oceGetData(): Extract Something From the data Slot of an oce Object

oceGetMetadata(): Extract Something From the metadata Slot of an oce Object

oceMagic(): Find the Type of an Oceanographic Data File

oceNames2whpNames(): Translate Oce Data Names to WHP Data Names

ocePmatch(): Partial Matching of Strings or Numbers

oceProject(): Wrapper to sf::sf_project()

oceRenameData(): Rename Something in the data slot of an oce Object

oceRenameMetadata(): Rename Something in the metadata Slot of an oce Object

oceSetData(): Set Something in the data Slot of an oce Object

oceSetMetadata(): Set Something in the metadata Slot of an oce Object

oceSmooth(): Smooth an oce Object

oceSpectrum(): Normalize a Spectrum

oceUnits2whpUnits(): Translate oce Unit to WHP Unit

ocecolors: Data That Define Some Color Palettes

odf-class: Class to Store ODF Data

parseLatLon(): Parse a Latitude or Longitude String

plot(<adp>): Plot an adp Object

plot(<adv>): Plot an adv Object

plot(<amsr>): Plot an amsr Object

plot(<argo>): Plot an argo Object

plot(<bremen>): Plot a bremen Object

plot(<cm>): Plot a cm Object

plot(<coastline>): Plot a coastline Object

plot(<ctd>): Plot a ctd Object

plot(<echosounder>): Plot an echosounder Object

plot(<gps>): Plot a gps Object

plot(<ladp>): Plot an ladp Object

plot(<landsat>): Plot a landsat Object

plot(<lisst>): Plot a lisst Object

plot(<lobo>): Plot a lobo object

plot(<met>): Plot a met Object

plot(<oce>): Plot an oce Object

plot(<odf>): Plot an odf Object

plot(<rsk>): Plot a rsk Object

plot(<satellite>): Plot a satellite Object

plot(<sealevel>): Plot a sealevel Object

plot(<section>): Plot a section Object

plot(<tidem>): Plot a tidem Object

plot(<topo>): Plot a topo Object

plot(<windrose>): Plot a windrose Object

plot(<xbt>): Plot an xbt Object

plotInset(): Plot an Inset Diagram

plotPolar(): Draw a Polar Plot

plotProfile(): Plot a ctd Profile

plotScan(): Plot a ctd Object in a Low-Level Fashion

plotSticks(): Draw a Stick Plot

plotTS(): Plot Temperature-Salinity Diagram

plotTaylor(): Plot a Model-data Comparison Diagram

predict(<tidem>): Predict a Tidal Signal

preferAdjusted(): Set Preference for Adjusted Values

presentTime(): Get the Present Time, in a Stated Timezone

prettyPosition(): Pretty Longitude/Latitude in Degree-Minute-Second Format

`processingLog<-`(): Add an Item to a Processing Log

processingLogAppend(): Append an Item to a Processing Log

processingLogItem(): Create an Item That can be Inserted into a Processing Log

processingLogShow(): Show the Processing Log of an oce Object

pwelch(): Welch Periodogram

rangeExtended(): Calculate Range, Extended a Little, as is Done for Axes

rangeLimit(): Substitute NA for Data Outside a Range

read.adp(): Read an adp File

read.adp.ad2cp(): Read an adp File in Nortek AD2CP Format

read.adp.nortek(): Read an adp File in Nortek Format

read.adp.rdi(): Read an adp File in Teledyne/RDI Format

read.adp.sontek(): Read an adp File in Sontek Format

read.adp.sontek.serial(): Read an adp File in Serial Sontek Format

read.adv(): Read an adv File

read.adv.nortek(): Read an adv File

read.adv.sontek.adr(): Read an adv File

read.adv.sontek.serial(): Read an adv File

read.adv.sontek.text(): Read an adv File

read.amsr(): Read an amsr File

read.aquadopp(): Read an adp File in Nortek Aquadopp Format

read.aquadoppHR(): Read Nortek Aquadopp-HR File

read.aquadoppProfiler(): Read an adp File in Nortek Aquadopp Format

read.argo(): Read an Argo Data File

read.argo.copernicus(): Read an argo File in Copernicus Format

read.bremen(): Read a bremen File

read.cm(): Read a cm File

read.coastline(): Read a coastline File

read.coastline.openstreetmap(): Read a coastline File in Openstreetmap Format

read.coastline.shapefile(): Read a coastline File in Shapefile Format

read.ctd(): Read a ctd File in General Format

read.ctd.aml(): Read a ctd File in AML Format

read.ctd.itp(): Read a ctd File in ITP Format

read.ctd.odf(): Read a ctd File in odf Format

read.ctd.odv(): Read a "ctd" File in ODV Format

read.ctd.saiv(): Read a ctd File in SAIV Format

read.ctd.sbe(): Read a ctd File in Seabird Format

read.ctd.ssda(): Read a ctd File in SSDA Format

read.ctd.woce(): Read a ctd File in WOCE-Exchange Format

read.ctd.woce.other(): Read a ctd File in WOCE-Exchange EXPOCODE Format

read.echosounder(): Read an echosounder File

read.g1sst(): Read a g1sst File

read.gps(): Read a gps File

read.index(): Read a NOAA Ocean Index File

read.landsat(): Read a landsat File Directory

read.lisst(): Read a lisst File

read.lobo(): Read a lobo File

read.met(): Read a met File

read.netcdf(): Read a NetCDF File

read.oce(): Read an Oceanographic Data File

read.odf(): Read an odf File

read.rsk(): Read a rsk File

read.sealevel(): Read a sealevel File

read.section(): Read a section File

read.topo(): Read a topo File

read.woa(): Read a World Ocean Atlas NetCDF File

read.xbt(): Read an xbt file

read.xbt.edf(): Read an xbt File in Sippican Format Type 1

read.xbt.edf2(): Read an xbt File in Sippican Format Type 2

read.xbt.noaa1(): Read an xbt File in NOAA Format

read.xbt.noaa2(): Read an xbt File in UBT (Universal BathyThermograph) Format

rename(): Rename variables according to a specified dictionary

rescale(): Rescale Values to lie in a Given Range

resizableLabel(): Variable Names in Adjustable Sizes

retime(): Adjust The Time Within an oce Object

rotateAboutZ(): Rotate Velocity Components Within an oce Object

rsk-class: Class to Store Rsk Data

rsk: Sample rsk Data

rsk2ctd(): Create a ctd Object from an rsk Object

rskPatm(): Estimate Atmospheric Pressure in an rsk Object

rskToc(): Decode Table-of-Contents From an rsk File

runlm(): Calculate Running Linear Models

satellite-class: Class to Store Satellite Data

sealevel-class: Class to Store Sealevel Data

sealevel: Sample sealevel Data (Halifax Harbour)

sealevelTuktoyaktuk: Sample sealevel Data (Tuktoyaktuk)

secondsToCtime(): Express Time Interval as Colon-Separated String

section-class: Class to Store Hydrographic Section Data

section: Sample section Data

sectionAddStation(): Add a ctd Profile to a section Object

sectionGrid(): Grid a Section in Pressure Space

sectionSmooth(): Smooth a Section

sectionSort(): Sort a Section

setFlags(<adp>): Set Data-Quality Flags within a adp Object

setFlags(<ctd>): Set Data-Quality Flags within a ctd Object

setFlags(<oce>): Set Data-Quality Flags within a oce Object

setFlags(): Set Data-Quality Flags within a oce Object

shiftLongitude(): Shift Longitude to Range -180 to 180

showMetadataItem(): Show an Item in the metadata Slot of an oce Object

siderealTime(): Convert From POSIXt Time to Sidereal Time

snakeToCamel(): Convert From Snake-Case to Camel-Case Notation

standardDepths(): Standard Oceanographic Depths

standardizeLongitude(): Put Longitude in the Range From -180 to 180

`[[`(<adp>): Extract Something From an adp Object

`[[`(<adv>): Extract Something from an adv Object

`[[`(<amsr>): Extract Something From an amsr Object

`[[`(<argo>): Extract Something From an argo Object

`[[`(<bremen>): Extract Something From a bremen Object

`[[`(<cm>): Extract Something From a cm Object

`[[`(<coastline>): Extract Something From a coastline Object

`[[`(<ctd>): Extract Something From a ctd Object

`[[`(<echosounder>): Extract Something From an echosounder Object

`[[`(<g1sst>): Extract Something From a g1sst Object

`[[`(<gps>): Extract Something From a gps Object

`[[`(<ladp>): Extract Something From an ladp Object

`[[`(<landsat>): Extract Something From a landsat Object

`[[`(<lisst>): Extract Something From a lisst Object

`[[`(<lobo>): Extract Something From a lobo Object

`[[`(<met>): Extract Something From a met Object

`[[`(<oce>): Extract Something From an oce Object

`[[`(<odf>): Extract Something From an odf Object

`[[`(<rsk>): Extract Something From a rsk Object

`[[`(<sealevel>): Extract Something From a sealevel Object

`[[`(<section>): Extract Something From a section Object

`[[`(<tidem>): Extract Something From a tidem Object

`[[`(<topo>): Extract Something From a topo Object

`[[`(<windrose>): Extract Something From a windrose Object

`[[`(<xbt>): Extract Something From an xbt Object

`[[<-`(<adp>): Replace Parts of an adp Object

`[[<-`(<adv>): Replace Parts of an adv Object

`[[<-`(<amsr>): Replace Parts of an amsr Object

`[[<-`(<argo>): Replace Parts of an argo Object

`[[<-`(<bremen>): Replace Parts of a bremen Object

`[[<-`(<cm>): Replace Parts of a cm Object

`[[<-`(<coastline>): Replace Parts of a coastline Object

`[[<-`(<ctd>): Replace Parts of a ctd Object

`[[<-`(<echosounder>): Replace Parts of an echosounder Object

`[[<-`(<g1sst>): Replace Parts of a g1sst Object

`[[<-`(<gps>): Replace Parts of a gps Object

`[[<-`(<ladp>): Replace Parts of an ladp Object

`[[<-`(<landsat>): Replace Parts of a landsat Object

`[[<-`(<lisst>): Replace Parts of a lisst Object

`[[<-`(<lobo>): Replace Parts of a lobo Object

`[[<-`(<met>): Replace Parts of a met Object

`[[<-`(<oce>): Replace Parts of an oce Object

`[[<-`(<odf>): Replace Parts of an odf Object

`[[<-`(<rsk>): Replace Parts of an rsk Object

`[[<-`(<sealevel>): Replace Parts of a sealevel Object

`[[<-`(<section>): Replace Parts of a section Object

`[[<-`(<tidem>): Replace Parts of a tidem Object

`[[<-`(<topo>): Replace Parts of a topo Object

`[[<-`(<windrose>): Replace Parts of a windrose Object

`[[<-`(<xbt>): Replace Parts of an xbt Object

subset(<adp>): Subset an adp Object

subset(<adv>): Subset an adv Object

subset(<amsr>): Subset an amsr Object

subset(<argo>): Subset an argo Object

subset(<cm>): Subset a cm Object

subset(<coastline>): Subset a coastline Object

subset(<ctd>): Subset a ctd Object

subset(<echosounder>): Subset an echosounder Object

subset(<lobo>): Subset a lobo Object

subset(<met>): Subset a met Object

subset(<oce>): Subset an oce Object

subset(<odf>): Subset an odf Object

subset(<rsk>): Subset a rsk Object

subset(<sealevel>): Subset a sealevel Object

subset(<section>): Subset a section Object

subset(<topo>): Subset a topo Object

subset(<xbt>): Subset an xbt Object

subtractBottomVelocity(): Subtract Bottom Velocity From an adp Object

summary(<adp>): Summarize an adp Object

summary(<adv>): Summarize an adv Object

summary(<amsr>): Summarize an amsr Object

summary(<argo>): Summarize an argo Object

summary(<bremen>): Summarize a bremen Object

summary(<cm>): Summarize a cm Object

summary(<coastline>): Summarize a coastline Object

summary(<ctd>): Summarize a ctd Object

summary(<echosounder>): Summarize an echosounder Object

summary(<gps>): Summarize a gps Object

summary(<ladp>): Summarize an ladp Object

summary(<landsat>): Summarize a landsat Object

summary(<lisst>): Summarize a lisst Object

summary(<lobo>): Summarize a lobo Object

summary(<met>): Summarize a met Object

summary(<oce>): Summarize an oce Object

summary(<odf>): Summarize an odf Object

summary(<rsk>): Summarize a rsk Object

summary(<satellite>): Summarize a satellite Object

summary(<sealevel>): Summarize a sealevel Object

summary(<section>): Summarize a section Object

summary(<tidem>): Summarize a tidem Object

summary(<topo>): Summarize a topo Object

summary(<windrose>): Summarize a windrose Object

summary(<xbt>): Summarize an xbt Object

sunAngle(): Solar Angle as Function of Space and Time

sunDeclinationRightAscension(): Sun Declination and Right Ascension

swAbsoluteSalinity(): Seawater Absolute Salinity (GSW Formulation)

swAlpha(): Seawater Thermal Expansion Coefficient

swAlphaOverBeta(): Ratio of Seawater Thermal Expansion Coefficient to Haline Contraction Coefficient

swBeta(): Seawater Haline Contraction Coefficient

swCSTp(): Electrical Conductivity Ratio From Salinity, Temperature and Pressure

swConservativeTemperature(): Seawater Conservative Temperature (GSW Formulation)

swDepth(): Water Depth

swDynamicHeight(): Dynamic Height of a Seawater Profile

swLapseRate(): Seawater Lapse Rate

swN2(): Squared Buoyancy Frequency for Seawater

swPressure(): Water Pressure

swRho(): Seawater Density

swRrho(): Density Ratio

swSCTp(): Practical Salinity From Electrical Conductivity, Temperature and Pressure

swSR(): Seawater Reference Salinity (GSW Formulation)

swSTrho(): Seawater Salinity From Temperature and Density

swSigma(): Seawater Density Anomaly

swSigma0(): Seawater Potential Density Anomaly Referenced to Surface Pressure

swSigma1(): Seawater Potential Density Anomaly Referenced to 1000db Pressure

swSigma2(): Seawater Potential Density Anomaly Referenced to 2000db Pressure

swSigma3(): Seawater Potential Density Anomaly Referenced to 3000db Pressure

swSigma4(): Seawater Potential Density Anomaly Referenced to 4000db Pressure

swSigmaT(): Seawater Quasi-Potential Density Anomaly

swSigmaTheta(): Seawater Potential Density Anomaly

swSoundAbsorption(): Seawater Sound Absorption

swSoundSpeed(): Seawater Sound Speed

swSpecificHeat(): Seawater Specific Heat

swSpice(): Seawater Spiciness

swSpiciness0(): Spiciness in gsw System, Referenced to Surface Pressure

swSpiciness1(): Spiciness in gsw System, Referenced to 1000 dbar Pressure

swSpiciness2(): Spiciness in gsw System, Referenced to 2000 dbar Pressure

swSstar(): Seawater Preformed Salinity (GSW Formulation)

swTFreeze(): Seawater Freezing Temperature

swTSrho(): Seawater Temperature from Salinity and Density

swThermalConductivity(): Seawater Thermal Conductivity

swTheta(): Seawater Potential Temperature (UNESCO Version)

swViscosity(): Seawater Viscosity

swZ(): Vertical Coordinate

tail(<oce>): Extract the End of an Oce Object

threenum(): Calculate Minimum, Mean, and Maximum Values

tidalCurrent: Tidal Current Dataset

tidedata: Tidal Constituent Information

tidem-class: Class to Store Tidal Models

tidem(): Fit a Tidal Model to a Timeseries

tidemAstron(): Astronomical Calculations for tidem

tidemConstituentNameFix(): Change Tidal Constituent Name from T-TIDE to Foreman Convention

tidemVuf(): Nodal Modulation Calculations for Tidal Analyses

timeToArgoJuld(): Convert Time to Argo Julian Day (juld)

titleCase(): Capitalize First Letter of Each of a Vector of Words

toEnu(): Rotate Acoustic-Doppler Data to the ENU Coordinate System

toEnuAdp(): Convert an adp Object to ENU Coordinates

toEnuAdv(): Convert an adv Object to ENU Coordinates

topo-class: Class to Store Topographic Data

topoInterpolate(): Interpolate Within a topo Object

topoWorld: Global Topographic Data (at Half-degree Resolution)

unabbreviateYear(): Determine Year From Various Abbreviations

undriftTime(): Correct for Drift in an Instrument Clock

unduplicateNames(): Rename Duplicated Character Strings

ungrid(): Extract (x, y, z) From (x, y, grid)

unitFromString(): Decode Units From Strings

unitFromStringRsk(): Infer rsk Units From a Vector of Strings

unwrapAngle(): Unwrap an Angle That Suffers Modulo-360 Problems

useHeading(): Replace the Heading for One Instrument With That of Another

usrLonLat(): Calculate Geographic Coordinates of Plot Box

utm2lonlat(): Convert UTM to Longitude and Latitude

vectorShow(): Show Some Values From a List, Vector or Matrix

velocityStatistics(): Report Statistics of adp or adv Velocities

webtide(): Get a Tidal Prediction From a WebTide Database

wind: Sample Wind Data

window(<oce>): Window an oce Object by Time or Distance

windrose-class: Class to Store windrose Data

woceNames2oceNames(): Translate WOCE Data Names to Oce Data Names

woceUnit2oceUnit(): Translate WOCE Units to oce Units

write.ctd(): Save a ctd Object in a CSV File

xbt-class: Class to Store XBT (Expendable Bathythermograph) Data

xbt: Sample xbt Data

xbt.edf: Sample xbt File in space-separated .edf Format

xbt2.edf: Sample xbt File in tab-separated .edf Format

xyzToEnu(): Convert Acoustic-Doppler Data From XYZ to ENU Coordinates

xyzToEnuAdp(): Convert adp Object From XYZ to ENU Coordinates

xyzToEnuAdpAD2CP(): Convert adp Object of AD2CP type From XYZ to ENU Coordinates

xyzToEnuAdv(): Convert an adv Object From XYZ to ENU Coordinates