Skip to contents

CTD data

Functions related to working with CTD data

CTD_BCD2014666_008_1_DN.ODF.gz
Sample ctd File in .odf Format
as.ctd()
Coerce Data Into a ctd Object
cnvName2oceName()
Infer Variable Name, Units and Scale From a Seabird Header
ctd-class
Class to Store CTD (or general hydrographic) Data
ctd
Sample ctd Data
ctd.cnv.gz
Sample ctd File in .cnv Format
ctdDecimate()
Decimate a ctd Profile
ctdFindProfiles()
Find Profiles Within a Tow-Yow ctd Record
ctdFindProfilesRBR()
Find Profiles Within a ctd Object Read From a RBR File
ctdRaw
Sample ctd Data, Not Trimmed of Extraneous Data
ctdRepair()
Repair a Malformed ctd Object
ctdTrim()
Trim Beginning and Ending of a CTD cast
ctd_aml_type1.csv.gz
Sample ctd File in aml Format 1
ctd_aml_type3.csv.gz
Sample ctd File in aml Format 3
d200321-001.ctd.gz
Sample ctd File in .ctd Format
d201211_0011.cnv.gz
Sample ctd File in .cnv Format
handleFlags(<ctd>)
Handle Flags in ctd Objects
initialize(<ctd>)
Initialize Storage for a ctd Object
initializeFlagScheme(<ctd>)
Establish a Data-Quality Scheme for a ctd Object
oceNames2whpNames()
Translate Oce Data Names to WHP Data Names
oceUnits2whpUnits()
Translate oce Unit to WHP Unit
plot(<ctd>)
Plot a ctd Object
plotProfile()
Plot a ctd Profile
plotScan()
Plot a ctd Object in a Low-Level Fashion
plotTS()
Plot Temperature-Salinity Diagram
read.ctd()
Read a ctd File in General Format
read.ctd.aml()
Read a ctd File in AML Format
read.ctd.itp()
Read a ctd File in ITP Format
read.ctd.odf()
Read a ctd File in odf Format
read.ctd.odv()
Read a "ctd" File in ODV Format
read.ctd.saiv()
Read a ctd File in SAIV Format
read.ctd.sbe()
Read a ctd File in Seabird Format
read.ctd.ssda()
Read a ctd File in SSDA Format
read.ctd.woce()
Read a ctd File in WOCE-Exchange Format
read.ctd.woce.other()
Read a ctd File in WOCE-Exchange EXPOCODE Format
setFlags(<ctd>)
Set Data-Quality Flags within a ctd Object
`[[`(<ctd>)
Extract Something From a ctd Object
`[[<-`(<ctd>)
Replace Parts of a ctd Object
subset(<ctd>)
Subset a ctd Object
summary(<ctd>)
Summarize a ctd Object
woceNames2oceNames()
Translate WOCE Data Names to Oce Data Names
woceUnit2oceUnit()
Translate WOCE Units to oce Units
write.ctd()
Save a ctd Object in a CSV File

Acoustic Doppler data

Functions related to acoustic Doppler instruments and data

ad2cpCodeToName()
Map AD2CP ID Code to oce Name
ad2cpHeaderValue()
Infer an Item From a Nortek AD2CP File Header
adp-class
Class to Store Acoustic-Doppler Profiler Data
adp
Sample adp Data
adpAd2cpFileTrim()
Trim an AD2CP File
adpConvertRawToNumeric()
Convert Raw to Numeric Values in an adp Object
adpEnsembleAverage()
Ensemble Average an adp Object in Time
adpFlagPastBoundary()
Flag adp Data Past Water Column Boundary
adpRdiFileTrim()
Trim an RDI adp File
adp_rdi.000
Sample adp File in RDI Format
applyMagneticDeclination(<adp>)
Alter an adp Object to Account for Magnetic Declination
as.adp()
Create an adp Object
beamName()
Get Names of Acoustic-Doppler Beams
beamToXyz()
Change the Coordinate System in an adv or adp Object
beamToXyzAdp()
Convert adp Object From Beam to XYZ Coordinates
beamToXyzAdpAD2CP()
Convert From Beam to XYZ Coordinates (AD2CP adp Data)
beamToXyzAdv()
Convert adv Object from Beam Coordinates to XYZ Coordinates
beamUnspreadAdp()
Adjust adp Object to Account for Spherical Spreading
binmapAdp()
Bin-map an adp Object
enuToOther()
Rotate Acoustic-Doppler Data to a New Coordinate System
enuToOtherAdp()
Convert adp Object from ENU Coordinate to Rotated Coordinate
handleFlags(<adp>)
Handle Flags in adp Objects
is.ad2cp()
Test Whether Item is a ad2cp-Type adp Object
plot(<adp>)
Plot an adp Object
read.adp()
Read an adp File
read.adp.ad2cp()
Read an adp File in Nortek AD2CP Format
read.adp.nortek()
Read an adp File in Nortek Format
read.adp.rdi()
Read an adp File in Teledyne/RDI Format
read.adp.sontek()
Read an adp File in Sontek Format
read.adp.sontek.serial()
Read an adp File in Serial Sontek Format
read.aquadopp()
Read an adp File in Nortek Aquadopp Format
read.aquadoppHR()
Read Nortek Aquadopp-HR File
read.aquadoppProfiler()
Read an adp File in Nortek Aquadopp Format
rotateAboutZ()
Rotate Velocity Components Within an oce Object
setFlags(<adp>)
Set Data-Quality Flags within a adp Object
`[[`(<adp>)
Extract Something From an adp Object
`[[<-`(<adp>)
Replace Parts of an adp Object
subset(<adp>)
Subset an adp Object
subtractBottomVelocity()
Subtract Bottom Velocity From an adp Object
summary(<adp>)
Summarize an adp Object
toEnu()
Rotate Acoustic-Doppler Data to the ENU Coordinate System
toEnuAdp()
Convert an adp Object to ENU Coordinates
velocityStatistics()
Report Statistics of adp or adv Velocities
xyzToEnu()
Convert Acoustic-Doppler Data From XYZ to ENU Coordinates
xyzToEnuAdp()
Convert adp Object From XYZ to ENU Coordinates
xyzToEnuAdpAD2CP()
Convert adp Object of AD2CP type From XYZ to ENU Coordinates
adv-class
Class to Store Acoustic-Doppler Velocimeter Data
adv
Sample adv Data
advSontekAdrFileTrim()
Trim a Sontek ADR adv File
applyMagneticDeclination(<adv>)
Alter an adv Object to Account for Magnetic Declination
enuToOtherAdv()
Convert ENU to Other Coordinate
plot(<adv>)
Plot an adv Object
read.adv()
Read an adv File
read.adv.nortek()
Read an adv File
read.adv.sontek.adr()
Read an adv File
read.adv.sontek.serial()
Read an adv File
read.adv.sontek.text()
Read an adv File
`[[`(<adv>)
Extract Something from an adv Object
`[[<-`(<adv>)
Replace Parts of an adv Object
subset(<adv>)
Subset an adv Object
summary(<adv>)
Summarize an adv Object
toEnuAdv()
Convert an adv Object to ENU Coordinates
xyzToEnuAdv()
Convert an adv Object From XYZ to ENU Coordinates

Argo float data and tools

Functions for working with Argo data

argo-class
Class to Store Argo Profiler Data
argo
Sample argo Data
argoGrid()
Grid Argo Float Data
argoNames2oceNames()
Convert Argo Data Name to Oce Name
as.argo()
Coerce Data Into an argo Object
handleFlags(<argo>)
Handle Flags in argo Objects
plot(<argo>)
Plot an argo Object
read.argo()
Read an Argo Data File
read.argo.copernicus()
Read an argo File in Copernicus Format
`[[`(<argo>)
Extract Something From an argo Object
`[[<-`(<argo>)
Replace Parts of an argo Object
subset(<argo>)
Subset an argo Object
summary(<argo>)
Summarize an argo Object

Seawater properties

Functions for calculating seawater properties

T68fromT90()
Convert From ITS-90 to IPTS-68 Temperature
T90fromT48()
Convert From ITS-48 to ITS-90 Temperature
T90fromT68()
Convert From IPTS-68 to ITS-90 Temperature
computableWaterProperties()
Determine Available Derived Water Properties
locationForGsw()
Alter Longitude and Latitude for gsw Computations
swAbsoluteSalinity()
Seawater Absolute Salinity (GSW Formulation)
swAlpha()
Seawater Thermal Expansion Coefficient
swAlphaOverBeta()
Ratio of Seawater Thermal Expansion Coefficient to Haline Contraction Coefficient
swBeta()
Seawater Haline Contraction Coefficient
swCSTp()
Electrical Conductivity Ratio From Salinity, Temperature and Pressure
swConservativeTemperature()
Seawater Conservative Temperature (GSW Formulation)
swDepth()
Water Depth
swDynamicHeight()
Dynamic Height of a Seawater Profile
swLapseRate()
Seawater Lapse Rate
swN2()
Squared Buoyancy Frequency for Seawater
swPressure()
Water Pressure
swRho()
Seawater Density
swRrho()
Density Ratio
swSCTp()
Practical Salinity From Electrical Conductivity, Temperature and Pressure
swSR()
Seawater Reference Salinity (GSW Formulation)
swSTrho()
Seawater Salinity From Temperature and Density
swSigma()
Seawater Density Anomaly
swSigma0()
Seawater Potential Density Anomaly Referenced to Surface Pressure
swSigma1()
Seawater Potential Density Anomaly Referenced to 1000db Pressure
swSigma2()
Seawater Potential Density Anomaly Referenced to 2000db Pressure
swSigma3()
Seawater Potential Density Anomaly Referenced to 3000db Pressure
swSigma4()
Seawater Potential Density Anomaly Referenced to 4000db Pressure
swSigmaT()
Seawater Quasi-Potential Density Anomaly
swSigmaTheta()
Seawater Potential Density Anomaly
swSoundAbsorption()
Seawater Sound Absorption
swSoundSpeed()
Seawater Sound Speed
swSpecificHeat()
Seawater Specific Heat
swSpice()
Seawater Spiciness
swSpiciness0()
Spiciness in gsw System, Referenced to Surface Pressure
swSpiciness1()
Spiciness in gsw System, Referenced to 1000 dbar Pressure
swSpiciness2()
Spiciness in gsw System, Referenced to 2000 dbar Pressure
swSstar()
Seawater Preformed Salinity (GSW Formulation)
swTFreeze()
Seawater Freezing Temperature
swTSrho()
Seawater Temperature from Salinity and Density
swThermalConductivity()
Seawater Thermal Conductivity
swTheta()
Seawater Potential Temperature (UNESCO Version)
swViscosity()
Seawater Viscosity
swZ()
Vertical Coordinate

Data quality flags

Functions for working with data quality flags

defaultFlags()
Suggest a Default Flag Vector for Bad or Suspicious Data
handleFlags(<adp>)
Handle Flags in adp Objects
handleFlags(<argo>)
Handle Flags in argo Objects
handleFlags(<ctd>)
Handle Flags in ctd Objects
handleFlags(<oce>)
Handle Flags in oce Objects
handleFlags(<section>)
Handle flags in section Objects
handleFlags()
Handle Flags in oce Objects (Generic)
initializeFlagScheme(<ctd>)
Establish a Data-Quality Scheme for a ctd Object
initializeFlagScheme(<oce>)
Establish a Data-Quality Scheme for a oce Object
initializeFlagScheme(<section>)
Establish a Data-Quality Scheme for a section Object
initializeFlagScheme()
Establish a Data-Quality Scheme for a oce Object
initializeFlagSchemeInternal()
Establish a Data-Quality Scheme for a oce Object
initializeFlags(<adp>)
Create and Initialize adp Flags
initializeFlags(<oce>)
Create and Initialize oce Flags
initializeFlags()
Create and Initialize oce Flags
initializeFlagsInternal()
Create and Initialize oce Flags
setFlags(<adp>)
Set Data-Quality Flags within a adp Object
setFlags(<ctd>)
Set Data-Quality Flags within a ctd Object
setFlags(<oce>)
Set Data-Quality Flags within a oce Object
setFlags()
Set Data-Quality Flags within a oce Object

All functions

CTD_BCD2014666_008_1_DN.ODF.gz
Sample ctd File in .odf Format
GMTOffsetFromTz()
Determine Time Offset From Timezone
ODF2oce()
Create ODF Object From Output of read_ODF in ODF package
ODFListFromHeader()
Create a List of odf Header Metadata
ODFNames2oceNames()
Translate ODF CODE Strings to oce Variable Names
T68fromT90()
Convert From ITS-90 to IPTS-68 Temperature
T90fromT48()
Convert From ITS-48 to ITS-90 Temperature
T90fromT68()
Convert From IPTS-68 to ITS-90 Temperature
abbreviateTimeLabels()
Abbreviate a Vector of Times by Removing Commonalities
ad2cpCodeToName()
Map AD2CP ID Code to oce Name
ad2cpHeaderValue()
Infer an Item From a Nortek AD2CP File Header
addSpine()
Add a Spine to a section Object
adp-class
Class to Store Acoustic-Doppler Profiler Data
adp
Sample adp Data
adpAd2cpFileTrim()
Trim an AD2CP File
adpConvertRawToNumeric()
Convert Raw to Numeric Values in an adp Object
adpEnsembleAverage()
Ensemble Average an adp Object in Time
adpFlagPastBoundary()
Flag adp Data Past Water Column Boundary
adpRdiFileTrim()
Trim an RDI adp File
adp_rdi.000
Sample adp File in RDI Format
adv-class
Class to Store Acoustic-Doppler Velocimeter Data
adv
Sample adv Data
advSontekAdrFileTrim()
Trim a Sontek ADR adv File
airRho()
Air Density
amsr-class
Class to Store AMSR-2 Satellite Data
amsr
Sample amsr Data (Near Nova Scotia)
angle2hms()
Convert Astronomical Angle in Degrees to Hours, Minutes and Seconds
angleRemap()
Convert Angle From 0:360 to -180:180 Convention
applyMagneticDeclination(<adp>)
Alter an adp Object to Account for Magnetic Declination
applyMagneticDeclination(<adv>)
Alter an adv Object to Account for Magnetic Declination
applyMagneticDeclination(<cm>)
Alter a cm Object to Account for Magnetic Declination
applyMagneticDeclination(<oce>)
Alter an Object to Account for Magnetic Declination
applyMagneticDeclination()
Alter an Object to Account for Magnetic Declination (Generic)
approx3d()
Trilinear Interpolation in a 3D Array
argShow()
Show a Function Argument
argo-class
Class to Store Argo Profiler Data
argo
Sample argo Data
argoGrid()
Grid Argo Float Data
argoJuldToTime()
Convert Argo Julian Day to R Time
argoNames2oceNames()
Convert Argo Data Name to Oce Name
as.adp()
Create an adp Object
as.argo()
Coerce Data Into an argo Object
as.cm()
Coerce Data Into a cm Object
as.coastline()
Coerce Data Into a coastline Object
as.ctd()
Coerce Data Into a ctd Object
as.echosounder()
Coerce Data Into an echosounder Object
as.gps()
Coerce Data Into a gps Object
as.ladp()
Coerce Data Into an ladp object
as.lisst()
Coerce Data Into a lisst Object
as.lobo()
Coerce Data Into a lobo Object
as.met()
Coerce Data Into a met Object
as.oce()
Coerce Something Into an oce Object
as.rsk()
Coerce Data Into a rsk Object
as.sealevel()
Coerce Data Into a sealevel Object
as.section()
Create a Section
as.tidem()
Create tidem Object From Fitted Harmonic Data
as.topo()
Coerce Data Into a topo Object
as.unit()
Convert a String to a Unit
as.windrose()
Create a windrose Object
as.xbt()
Create an xbt Object
bcdToInteger()
Convert a BCD Value to an Integer Value
beamName()
Get Names of Acoustic-Doppler Beams
beamToXyz()
Change the Coordinate System in an adv or adp Object
beamToXyzAdp()
Convert adp Object From Beam to XYZ Coordinates
beamToXyzAdpAD2CP()
Convert From Beam to XYZ Coordinates (AD2CP adp Data)
beamToXyzAdv()
Convert adv Object from Beam Coordinates to XYZ Coordinates
beamUnspreadAdp()
Adjust adp Object to Account for Spherical Spreading
bilinearInterp()
Bilinear Interpolation Within a Grid
binApply1D()
Apply a Function to Vector Data
binApply2D()
Apply a Function to Matrix Data
binAverage()
Bin-average a Vector y, Based on x Values
binCount1D()
Bin-count Vector Data
binCount2D()
Bin-count Matrix Data
binMean1D()
Bin-average f=f(x)
binMean2D()
Bin-average f=f(x,y)
binmapAdp()
Bin-map an adp Object
bodcNames2oceNames()
Determine oce Variable Names from an NERC/BODC Names
bound125()
Calculate a Bound, Rounded up to Mantissa 1, 2, or 5
bremen-class
Class to Store Bremen-formatted Data
byteToBinary()
Format Bytes as Binary (Defunct)
cm-class
Class to Store Current Meter Data
cm
Sample cm Data
cnvName2oceName()
Infer Variable Name, Units and Scale From a Seabird Header
coastline-class
Class to Store Coastline Data
coastlineBest()
Find the Name of the Best Coastline Object
coastlineCut()
Cut a Coastline Object at Specified Longitude
coastlineWorld
Sample coastline Data (Global, at 1:110M scale)
colormap()
Calculate a Color Map
colormapGMT()
Create a GMT-type (CPT) Colormap
composite(<amsr>)
Create a Composite of amsr Satellite Data
composite(<list>)
Composite by Averaging Across Data
composite()
Create a Composite Object by Averaging Across Good Data
computableWaterProperties()
Determine Available Derived Water Properties
concatenate(<adp>)
Concatenate adp Objects
concatenate(<list>)
Concatenate a List of oce Objects
concatenate(<oce>)
Concatenate oce Objects (oce-Specific)
concatenate()
Concatenate oce Objects (Generic)
coriolis()
Coriolis Parameter on the Earth
ctd-class
Class to Store CTD (or general hydrographic) Data
ctd
Sample ctd Data
ctd.cnv.gz
Sample ctd File in .cnv Format
ctdDecimate()
Decimate a ctd Profile
ctdFindProfiles()
Find Profiles Within a Tow-Yow ctd Record
ctdFindProfilesRBR()
Find Profiles Within a ctd Object Read From a RBR File
ctdRaw
Sample ctd Data, Not Trimmed of Extraneous Data
ctdRepair()
Repair a Malformed ctd Object
ctdTrim()
Trim Beginning and Ending of a CTD cast
ctd_aml_type1.csv.gz
Sample ctd File in aml Format 1
ctd_aml_type3.csv.gz
Sample ctd File in aml Format 3
ctimeToSeconds()
Interpret a Character String as a Time Interval
curl()
Curl of 2D Vector Field
d200321-001.ctd.gz
Sample ctd File in .ctd Format
d201211_0011.cnv.gz
Sample ctd File in .cnv Format
dataLabel()
Associate Data Names With Units
decimate()
Smooth and Decimate, or Subsample, an oce Object
decodeHeaderNortek()
Decode a Nortek Header
decodeTime()
Oce Version of as.POSIXct
defaultFlags()
Suggest a Default Flag Vector for Bad or Suspicious Data
despike()
Remove Spikes From a Time Series
detrend()
Detrend a Set of Observations
download.amsr()
Download and Cache an amsr File
download.coastline()
Download a coastline File
download.met()
Download and Cache a met File
download.topo()
Download and Cache a topo File
drawDirectionField()
Draw a Direction Field
drawIsopycnals()
Add Isopycnal Curves to a TS Plot
drawPalette()
Draw a Palette, Leaving Margins Suitable for an Accompanying Plot
echosounder-class
Class to Store Echosounder Data
echosounder
Sample echosounder Data
eclipticalToEquatorial()
Convert Ecliptical Coordinate to Equatorial Coordinate
enuToOther()
Rotate Acoustic-Doppler Data to a New Coordinate System
enuToOtherAdp()
Convert adp Object from ENU Coordinate to Rotated Coordinate
enuToOtherAdv()
Convert ENU to Other Coordinate
equatorialToLocalHorizontal()
Convert Equatorial Coordinate to Local Horizontal Coordinate
errorbars()
Draw Error Bars on an Existing xy Diagram
fillGap()
Fill a Gap in an oce Object
fillGapMatrix()
Fill a Gap in a Matrix
findBottom()
Find the Ocean Bottom in an Echosounder Object
firstFinite()
Get First Finite Value in a Vector or Array.
formatCI()
Format a Confidence Interval
formatPosition()
Format Geographical Position in Degrees and Minutes
fullFilename()
Full Name of File, Including Path
g1sst-class
Class to Store G1SST Satellite/Model Data
gappyIndex()
Create a Possibly Gappy Indexing Vector
geodDist()
Compute Geodesic Distance on Surface of Earth
geodGc()
Great-circle Segments Between Points on Earth
geodXy()
Convert From Geographical to Geodesic Coordinates
geodXyInverse()
Inverse Geodesic Calculation
gps-class
Class to Store GPS Data
grad()
Calculate Matrix Gradient
gravity()
Acceleration Due to Earth Gravity
handleFlags(<adp>)
Handle Flags in adp Objects
handleFlags(<argo>)
Handle Flags in argo Objects
handleFlags(<ctd>)
Handle Flags in ctd Objects
handleFlags(<oce>)
Handle Flags in oce Objects
handleFlags(<section>)
Handle flags in section Objects
handleFlags(<vector>)
Signal Erroneous Application to non-oce Objects
handleFlags()
Handle Flags in oce Objects (Generic)
handleFlagsInternal()
Low-Level Function for Handling Data-Quality Flags
head(<oce>)
Extract The Start of an Oce Object
imagep()
Plot an Image with a Color Palette
initialize(<ctd>)
Initialize Storage for a ctd Object
initializeFlagScheme(<ctd>)
Establish a Data-Quality Scheme for a ctd Object
initializeFlagScheme(<oce>)
Establish a Data-Quality Scheme for a oce Object
initializeFlagScheme(<section>)
Establish a Data-Quality Scheme for a section Object
initializeFlagScheme()
Establish a Data-Quality Scheme for a oce Object
initializeFlagSchemeInternal()
Establish a Data-Quality Scheme for a oce Object
initializeFlags(<adp>)
Create and Initialize adp Flags
initializeFlags(<oce>)
Create and Initialize oce Flags
initializeFlags()
Create and Initialize oce Flags
initializeFlagsInternal()
Create and Initialize oce Flags
integerToAscii()
Infer ASCII Code From an Integer Value
integrateTrapezoid()
Trapezoidal Integration
interpBarnes()
Grid Data Using the Barnes Algorithm
is.ad2cp()
Test Whether Item is a ad2cp-Type adp Object
julianCenturyAnomaly()
Convert Julian-Day-Number to Julian Century
julianDay()
Convert a Time to a Julian Day
labelWithUnit()
Create Label With Unit
ladp-class
Class to Store Lowered-adp Data
landsat-class
Class to Store Landsat Satellite Data
landsat
Sample landsat Data
landsatAdd()
Add a Band to a landsat Object
landsatTrim()
Trim a landsat Image to a Geographical Region
latFormat()
Format a Latitude
latlonFormat()
Format a Latitude-Longitude Pair
lisst-class
Class to Store LISST Data
lisst
Sample lisst Data
lobo-class
Class to Store LOBO Data
lobo
Sample lobo Data
locationForGsw()
Alter Longitude and Latitude for gsw Computations
lon360()
Change Longitude From -180:180 to 0:360 Convention
lonFormat()
Format a Longitude
longitudeTighten()
Try to Reduce Section Longitude Range
lonlat2map()
Convert Longitude and Latitude to X and Y
lonlat2utm()
Convert Longitude and Latitude to UTM
lookWithin()
Look Within the First Element of a List for Replacement Values
lowpass()
Lowpass Digital Filtering
magneticField()
Earth Magnetic Declination, Inclination, and Intensity
makeFilter()
Make a Digital Filter
map2lonlat()
Convert X and Y to Longitude and Latitude
mapArrows()
Add Arrows to a Map
mapAxis()
Add Axis Labels to an Existing Map
mapContour()
Add Contours on a Existing map
mapCoordinateSystem()
Draw a Coordinate System
mapDirectionField()
Add a Direction Field to an Existing Map
mapGrid()
Add a Longitude and Latitude Grid to an Existing Map
mapImage()
Add an Image to a Map
mapLines()
Add Lines to a Map
mapLocator()
Locate Points on a Map
mapLongitudeLatitudeXY()
Convert From Longitude and Latitude to X and Y
mapPlot()
Draw a Map
mapPoints()
Add Points to a Map
mapPolygon()
Add a Polygon to a Map
mapScalebar()
Add a Scalebar to a Map
mapText()
Add Text to a Map
mapTissot()
Add Tissot Indicatrices to a Map
matchBytes()
Locate Byte Sequences in a Raw Vector
matrixShiftLongitude()
Rearrange Areal Matrix so Greenwich is Near the Centre
matrixSmooth()
Smooth a Matrix
met-class
Class to Store Meteorological Data
met
Sample met Data
metNames2oceNames()
Convert met Data Name to oce Name
moonAngle()
Lunar Angle as Function of Space and Time
netcdfTOC()
Print an overview of the contents of a NetCDF file
numberAsHMS()
Convert a Numeric Time to Hour, Minute, and Second
numberAsPOSIXct()
Convert a Numeric Time to a POSIXct Time
oce-class
Base Class for oce Objects
oce-deprecated oce-defunct
Deprecated and Defunct Elements of the oce Package
oce.as.raw()
Version of as.raw() That Clips Data
oce.axis.POSIXct()
Oce Version of axis.POSIXct
oce.contour()
Oce Variant of contour
oce.grid()
Add a Grid to an Existing Oce Plot
oce.plot.ts()
Oce Variant of plot.ts
oce.write.table()
Write the Data Portion of Object to a File
oceApprox()
Interpolate 1D Data with UNESCO or Reiniger-Ross Algorithm
oceAxis()
Draw an Axis, Possibly with Decade-style Logarithmic Scaling
oceCRS()
Coordinate Reference System Strings for Some Oceans
oceColors9B()
Create Colors in a Red-Yellow-Blue Color Scheme
oceColorsCDOM()
Create Colors Suitable for CDOM Fields
oceColorsChlorophyll()
Create Colors Suitable for chlorophyll Fields
oceColorsClosure()
Create Color Functions
oceColorsDensity()
Create Colors Suitable for density Fields
oceColorsFreesurface()
Create Colors Suitable for freesurface Fields
oceColorsGebco()
Create Colors in a GEBCO-like Scheme
oceColorsJet()
Create Colors Similar to the Matlab Jet Scheme
oceColorsOxygen()
Create Colors Suitable for oxygen Fields
oceColorsPAR()
Create Colors Suitable for PAR Fields
oceColorsPalette()
Create a Vector of Colors
oceColorsPhase()
Create Colors Suitable for phase Fields
oceColorsSalinity()
Create Colors Suitable for salinity Fields
oceColorsTemperature()
Create Colors Suitable for temperature Fields
oceColorsTurbidity()
Create Colors Suitable for turbidity Fields
oceColorsTurbo()
Create Colors Similar to the Google Turbo Scheme
oceColorsTwo()
Create Two-Color Palette
oceColorsVelocity()
Create Colors Suitable for velocity Fields
oceColorsViridis()
Create Colors Similar to the Matlab Viridis Scheme
oceColorsVorticity()
Create Colors Suitable for vorticity Fields
oceConvolve()
Convolve Two Time Series
oceDebug()
Print a Debugging Message
oceDeleteData()
Delete Something From the data Slot of an oce Object
oceDeleteMetadata()
Delete Something in an oce metadata Slot
oceEdit()
Edit an Oce Object
oceFileTrim()
Trim an oce File
oceFilter()
Filter a Time Series
oceGetData()
Extract Something From the data Slot of an oce Object
oceGetMetadata()
Extract Something From the metadata Slot of an oce Object
oceMagic()
Find the Type of an Oceanographic Data File
oceNames2whpNames()
Translate Oce Data Names to WHP Data Names
ocePmatch()
Partial Matching of Strings or Numbers
oceProject()
Wrapper to sf::sf_project()
oceRenameData()
Rename Something in the data slot of an oce Object
oceRenameMetadata()
Rename Something in the metadata Slot of an oce Object
oceSetData()
Set Something in the data Slot of an oce Object
oceSetMetadata()
Set Something in the metadata Slot of an oce Object
oceSmooth()
Smooth an oce Object
oceSpectrum()
Normalize a Spectrum
oceUnits2whpUnits()
Translate oce Unit to WHP Unit
ocecolors
Data That Define Some Color Palettes
odf-class
Class to Store ODF Data
parseLatLon()
Parse a Latitude or Longitude String
plot(<adp>)
Plot an adp Object
plot(<adv>)
Plot an adv Object
plot(<amsr>)
Plot an amsr Object
plot(<argo>)
Plot an argo Object
plot(<bremen>)
Plot a bremen Object
plot(<cm>)
Plot a cm Object
plot(<coastline>)
Plot a coastline Object
plot(<ctd>)
Plot a ctd Object
plot(<echosounder>)
Plot an echosounder Object
plot(<gps>)
Plot a gps Object
plot(<ladp>)
Plot an ladp Object
plot(<landsat>)
Plot a landsat Object
plot(<lisst>)
Plot a lisst Object
plot(<lobo>)
Plot a lobo object
plot(<met>)
Plot a met Object
plot(<oce>)
Plot an oce Object
plot(<odf>)
Plot an odf Object
plot(<rsk>)
Plot a rsk Object
plot(<satellite>)
Plot a satellite Object
plot(<sealevel>)
Plot a sealevel Object
plot(<section>)
Plot a section Object
plot(<tidem>)
Plot a tidem Object
plot(<topo>)
Plot a topo Object
plot(<windrose>)
Plot a windrose Object
plot(<xbt>)
Plot an xbt Object
plotInset()
Plot an Inset Diagram
plotPolar()
Draw a Polar Plot
plotProfile()
Plot a ctd Profile
plotScan()
Plot a ctd Object in a Low-Level Fashion
plotSticks()
Draw a Stick Plot
plotTS()
Plot Temperature-Salinity Diagram
plotTaylor()
Plot a Model-data Comparison Diagram
predict(<tidem>)
Predict a Tidal Signal
preferAdjusted()
Set Preference for Adjusted Values
presentTime()
Get the Present Time, in a Stated Timezone
prettyPosition()
Pretty Longitude/Latitude in Degree-Minute-Second Format
`processingLog<-`()
Add an Item to a Processing Log
processingLogAppend()
Append an Item to a Processing Log
processingLogItem()
Create an Item That can be Inserted into a Processing Log
processingLogShow()
Show the Processing Log of an oce Object
pwelch()
Welch Periodogram
rangeExtended()
Calculate Range, Extended a Little, as is Done for Axes
rangeLimit()
Substitute NA for Data Outside a Range
read.adp()
Read an adp File
read.adp.ad2cp()
Read an adp File in Nortek AD2CP Format
read.adp.nortek()
Read an adp File in Nortek Format
read.adp.rdi()
Read an adp File in Teledyne/RDI Format
read.adp.sontek()
Read an adp File in Sontek Format
read.adp.sontek.serial()
Read an adp File in Serial Sontek Format
read.adv()
Read an adv File
read.adv.nortek()
Read an adv File
read.adv.sontek.adr()
Read an adv File
read.adv.sontek.serial()
Read an adv File
read.adv.sontek.text()
Read an adv File
read.amsr()
Read an amsr File
read.aquadopp()
Read an adp File in Nortek Aquadopp Format
read.aquadoppHR()
Read Nortek Aquadopp-HR File
read.aquadoppProfiler()
Read an adp File in Nortek Aquadopp Format
read.argo()
Read an Argo Data File
read.argo.copernicus()
Read an argo File in Copernicus Format
read.bremen()
Read a bremen File
read.cm()
Read a cm File
read.coastline()
Read a coastline File
read.coastline.openstreetmap()
Read a coastline File in Openstreetmap Format
read.coastline.shapefile()
Read a coastline File in Shapefile Format
read.ctd()
Read a ctd File in General Format
read.ctd.aml()
Read a ctd File in AML Format
read.ctd.itp()
Read a ctd File in ITP Format
read.ctd.odf()
Read a ctd File in odf Format
read.ctd.odv()
Read a "ctd" File in ODV Format
read.ctd.saiv()
Read a ctd File in SAIV Format
read.ctd.sbe()
Read a ctd File in Seabird Format
read.ctd.ssda()
Read a ctd File in SSDA Format
read.ctd.woce()
Read a ctd File in WOCE-Exchange Format
read.ctd.woce.other()
Read a ctd File in WOCE-Exchange EXPOCODE Format
read.echosounder()
Read an echosounder File
read.g1sst()
Read a g1sst File
read.gps()
Read a gps File
read.index()
Read a NOAA Ocean Index File
read.landsat()
Read a landsat File Directory
read.lisst()
Read a lisst File
read.lobo()
Read a lobo File
read.met()
Read a met File
read.netcdf()
Read a NetCDF File
read.oce()
Read an Oceanographic Data File
read.odf()
Read an odf File
read.rsk()
Read a rsk File
read.sealevel()
Read a sealevel File
read.section()
Read a section File
read.topo()
Read a topo File
read.woa()
Read a World Ocean Atlas NetCDF File
read.xbt()
Read an xbt file
read.xbt.edf()
Read an xbt File in Sippican Format
read.xbt.noaa1()
Read an xbt File in NOAA Format
rescale()
Rescale Values to lie in a Given Range
resizableLabel()
Variable Names in Adjustable Sizes
retime()
Adjust The Time Within an oce Object
rotateAboutZ()
Rotate Velocity Components Within an oce Object
rsk-class
Class to Store Rsk Data
rsk
Sample rsk Data
rsk2ctd()
Create a ctd Object from an rsk Object
rskPatm()
Estimate Atmospheric Pressure in an rsk Object
rskToc()
Decode Table-of-Contents From an rsk File
runlm()
Calculate Running Linear Models
satellite-class
Class to Store Satellite Data
sealevel-class
Class to Store Sealevel Data
sealevel
Sample sealevel Data (Halifax Harbour)
sealevelTuktoyaktuk
Sample sealevel Data (Tuktoyaktuk)
secondsToCtime()
Express Time Interval as Colon-Separated String
section-class
Class to Store Hydrographic Section Data
section
Sample section Data
sectionAddStation()
Add a ctd Profile to a section Object
sectionGrid()
Grid a Section in Pressure Space
sectionSmooth()
Smooth a Section
sectionSort()
Sort a Section
setFlags(<adp>)
Set Data-Quality Flags within a adp Object
setFlags(<ctd>)
Set Data-Quality Flags within a ctd Object
setFlags(<oce>)
Set Data-Quality Flags within a oce Object
setFlags()
Set Data-Quality Flags within a oce Object
shiftLongitude()
Shift Longitude to Range -180 to 180
showMetadataItem()
Show an Item in the metadata Slot of an oce Object
siderealTime()
Convert From POSIXt Time to Sidereal Time
snakeToCamel()
Convert From Snake-Case to Camel-Case Notation
standardDepths()
Standard Oceanographic Depths
standardizeLongitude()
Put Longitude in the Range From -180 to 180
`[[`(<adp>)
Extract Something From an adp Object
`[[`(<adv>)
Extract Something from an adv Object
`[[`(<amsr>)
Extract Something From an amsr Object
`[[`(<argo>)
Extract Something From an argo Object
`[[`(<bremen>)
Extract Something From a bremen Object
`[[`(<cm>)
Extract Something From a cm Object
`[[`(<coastline>)
Extract Something From a coastline Object
`[[`(<ctd>)
Extract Something From a ctd Object
`[[`(<echosounder>)
Extract Something From an echosounder Object
`[[`(<g1sst>)
Extract Something From a g1sst Object
`[[`(<gps>)
Extract Something From a gps Object
`[[`(<ladp>)
Extract Something From an ladp Object
`[[`(<landsat>)
Extract Something From a landsat Object
`[[`(<lisst>)
Extract Something From a lisst Object
`[[`(<lobo>)
Extract Something From a lobo Object
`[[`(<met>)
Extract Something From a met Object
`[[`(<oce>)
Extract Something From an oce Object
`[[`(<odf>)
Extract Something From an odf Object
`[[`(<rsk>)
Extract Something From a rsk Object
`[[`(<sealevel>)
Extract Something From a sealevel Object
`[[`(<section>)
Extract Something From a section Object
`[[`(<tidem>)
Extract Something From a tidem Object
`[[`(<topo>)
Extract Something From a topo Object
`[[`(<windrose>)
Extract Something From a windrose Object
`[[`(<xbt>)
Extract Something From an xbt Object
`[[<-`(<adp>)
Replace Parts of an adp Object
`[[<-`(<adv>)
Replace Parts of an adv Object
`[[<-`(<amsr>)
Replace Parts of an amsr Object
`[[<-`(<argo>)
Replace Parts of an argo Object
`[[<-`(<bremen>)
Replace Parts of a bremen Object
`[[<-`(<cm>)
Replace Parts of a cm Object
`[[<-`(<coastline>)
Replace Parts of a coastline Object
`[[<-`(<ctd>)
Replace Parts of a ctd Object
`[[<-`(<echosounder>)
Replace Parts of an echosounder Object
`[[<-`(<g1sst>)
Replace Parts of a g1sst Object
`[[<-`(<gps>)
Replace Parts of a gps Object
`[[<-`(<ladp>)
Replace Parts of an ladp Object
`[[<-`(<landsat>)
Replace Parts of a landsat Object
`[[<-`(<lisst>)
Replace Parts of a lisst Object
`[[<-`(<lobo>)
Replace Parts of a lobo Object
`[[<-`(<met>)
Replace Parts of a met Object
`[[<-`(<oce>)
Replace Parts of an oce Object
`[[<-`(<odf>)
Replace Parts of an odf Object
`[[<-`(<rsk>)
Replace Parts of an rsk Object
`[[<-`(<sealevel>)
Replace Parts of a sealevel Object
`[[<-`(<section>)
Replace Parts of a section Object
`[[<-`(<tidem>)
Replace Parts of a tidem Object
`[[<-`(<topo>)
Replace Parts of a topo Object
`[[<-`(<windrose>)
Replace Parts of a windrose Object
`[[<-`(<xbt>)
Replace Parts of an xbt Object
subset(<adp>)
Subset an adp Object
subset(<adv>)
Subset an adv Object
subset(<amsr>)
Subset an amsr Object
subset(<argo>)
Subset an argo Object
subset(<cm>)
Subset a cm Object
subset(<coastline>)
Subset a coastline Object
subset(<ctd>)
Subset a ctd Object
subset(<echosounder>)
Subset an echosounder Object
subset(<lobo>)
Subset a lobo Object
subset(<met>)
Subset a met Object
subset(<oce>)
Subset an oce Object
subset(<odf>)
Subset an odf Object
subset(<rsk>)
Subset a rsk Object
subset(<sealevel>)
Subset a sealevel Object
subset(<section>)
Subset a section Object
subset(<topo>)
Subset a topo Object
subset(<xbt>)
Subset an xbt Object
subtractBottomVelocity()
Subtract Bottom Velocity From an adp Object
summary(<adp>)
Summarize an adp Object
summary(<adv>)
Summarize an adv Object
summary(<amsr>)
Summarize an amsr Object
summary(<argo>)
Summarize an argo Object
summary(<bremen>)
Summarize a bremen Object
summary(<cm>)
Summarize a cm Object
summary(<coastline>)
Summarize a coastline Object
summary(<ctd>)
Summarize a ctd Object
summary(<echosounder>)
Summarize an echosounder Object
summary(<gps>)
Summarize a gps Object
summary(<ladp>)
Summarize an ladp Object
summary(<landsat>)
Summarize a landsat Object
summary(<lisst>)
Summarize a lisst Object
summary(<lobo>)
Summarize a lobo Object
summary(<met>)
Summarize a met Object
summary(<oce>)
Summarize an oce Object
summary(<odf>)
Summarize an odf Object
summary(<rsk>)
Summarize a rsk Object
summary(<satellite>)
Summarize a satellite Object
summary(<sealevel>)
Summarize a sealevel Object
summary(<section>)
Summarize a section Object
summary(<tidem>)
Summarize a tidem Object
summary(<topo>)
Summarize a topo Object
summary(<windrose>)
Summarize a windrose Object
summary(<xbt>)
Summarize an xbt Object
sunAngle()
Solar Angle as Function of Space and Time
sunDeclinationRightAscension()
Sun Declination and Right Ascension
swAbsoluteSalinity()
Seawater Absolute Salinity (GSW Formulation)
swAlpha()
Seawater Thermal Expansion Coefficient
swAlphaOverBeta()
Ratio of Seawater Thermal Expansion Coefficient to Haline Contraction Coefficient
swBeta()
Seawater Haline Contraction Coefficient
swCSTp()
Electrical Conductivity Ratio From Salinity, Temperature and Pressure
swConservativeTemperature()
Seawater Conservative Temperature (GSW Formulation)
swDepth()
Water Depth
swDynamicHeight()
Dynamic Height of a Seawater Profile
swLapseRate()
Seawater Lapse Rate
swN2()
Squared Buoyancy Frequency for Seawater
swPressure()
Water Pressure
swRho()
Seawater Density
swRrho()
Density Ratio
swSCTp()
Practical Salinity From Electrical Conductivity, Temperature and Pressure
swSR()
Seawater Reference Salinity (GSW Formulation)
swSTrho()
Seawater Salinity From Temperature and Density
swSigma()
Seawater Density Anomaly
swSigma0()
Seawater Potential Density Anomaly Referenced to Surface Pressure
swSigma1()
Seawater Potential Density Anomaly Referenced to 1000db Pressure
swSigma2()
Seawater Potential Density Anomaly Referenced to 2000db Pressure
swSigma3()
Seawater Potential Density Anomaly Referenced to 3000db Pressure
swSigma4()
Seawater Potential Density Anomaly Referenced to 4000db Pressure
swSigmaT()
Seawater Quasi-Potential Density Anomaly
swSigmaTheta()
Seawater Potential Density Anomaly
swSoundAbsorption()
Seawater Sound Absorption
swSoundSpeed()
Seawater Sound Speed
swSpecificHeat()
Seawater Specific Heat
swSpice()
Seawater Spiciness
swSpiciness0()
Spiciness in gsw System, Referenced to Surface Pressure
swSpiciness1()
Spiciness in gsw System, Referenced to 1000 dbar Pressure
swSpiciness2()
Spiciness in gsw System, Referenced to 2000 dbar Pressure
swSstar()
Seawater Preformed Salinity (GSW Formulation)
swTFreeze()
Seawater Freezing Temperature
swTSrho()
Seawater Temperature from Salinity and Density
swThermalConductivity()
Seawater Thermal Conductivity
swTheta()
Seawater Potential Temperature (UNESCO Version)
swViscosity()
Seawater Viscosity
swZ()
Vertical Coordinate
tail(<oce>)
Extract the End of an Oce Object
threenum()
Calculate Minimum, Mean, and Maximum Values
tidalCurrent
Tidal Current Dataset
tidedata
Tidal Constituent Information
tidem-class
Class to Store Tidal Models
tidem()
Fit a Tidal Model to a Timeseries
tidemAstron()
Astronomical Calculations for tidem
tidemConstituentNameFix()
Change Tidal Constituent Name from T-TIDE to Foreman Convention
tidemVuf()
Nodal Modulation Calculations for Tidal Analyses
timeToArgoJuld()
Convert Time to Argo Julian Day (juld)
titleCase()
Capitalize First Letter of Each of a Vector of Words
toEnu()
Rotate Acoustic-Doppler Data to the ENU Coordinate System
toEnuAdp()
Convert an adp Object to ENU Coordinates
toEnuAdv()
Convert an adv Object to ENU Coordinates
topo-class
Class to Store Topographic Data
topoInterpolate()
Interpolate Within a topo Object
topoWorld
Global Topographic Data (at Half-degree Resolution)
unabbreviateYear()
Determine Year From Various Abbreviations
undriftTime()
Correct for Drift in an Instrument Clock
unduplicateNames()
Rename Duplicated Character Strings
ungrid()
Extract (x, y, z) From (x, y, grid)
unitFromString()
Decode Units From Strings
unitFromStringRsk()
Infer rsk Units From a Vector of Strings
unwrapAngle()
Unwrap an Angle That Suffers Modulo-360 Problems
useHeading()
Replace the Heading for One Instrument With That of Another
usrLonLat()
Calculate Geographic Coordinates of Plot Box
utm2lonlat()
Convert UTM to Longitude and Latitude
vectorShow()
Show Some Values From a List, Vector or Matrix
velocityStatistics()
Report Statistics of adp or adv Velocities
webtide()
Get a Tidal Prediction From a WebTide Database
wind
Sample Wind Data
window(<oce>)
Window an oce Object by Time or Distance
windrose-class
Class to Store windrose Data
woceNames2oceNames()
Translate WOCE Data Names to Oce Data Names
woceUnit2oceUnit()
Translate WOCE Units to oce Units
write.ctd()
Save a ctd Object in a CSV File
xbt-class
Class to Store XBT (Expendable Bathythermograph) Data
xbt
Sample xbt Data
xbt.edf
Sample xbt File in .edf Format
xyzToEnu()
Convert Acoustic-Doppler Data From XYZ to ENU Coordinates
xyzToEnuAdp()
Convert adp Object From XYZ to ENU Coordinates
xyzToEnuAdpAD2CP()
Convert adp Object of AD2CP type From XYZ to ENU Coordinates
xyzToEnuAdv()
Convert an adv Object From XYZ to ENU Coordinates