CTD data

Functions related to working with CTD data

CTD_BCD2014666_008_1_DN.ODF.gz

Sample ctd dataset in odf format

as.ctd()

Coerce data into CTD object

cnvName2oceName()

Infer variable name, units and scale from a Seabird (.cnv) header line

ctd-class

Class to Store CTD (or general hydrographic) Data

ctd

A CTD profile in Halifax Harbour

ctd.cnv

Sample ctd dataset in .cnv format

ctdDecimate()

Decimate a CTD profile

ctdFindProfiles()

Find Profiles within a Tow-Yow CTD Record

ctdRaw

Seawater CTD Profile, Without Trimming of Extraneous Data

ctdTrim()

Trim Beginning and Ending of a CTD cast

d200321-001.ctd

Sample ctd dataset in .ctd format

d201211_0011.cnv

Sample ctd dataset in .cnv format

handleFlags(<ctd>)

Handle Flags in CTD Objects

initialize(<ctd>)

Initialize storage for a ctd object

initializeFlagScheme(<ctd>)

Establish a data-quality scheme for a ctd object

oceNames2whpNames()

Translate Oce Data Names to WHP Data Names

oceUnits2whpUnits()

Translate oce unit to WHP unit

plot(<ctd>)

Plot a ctd Object

plotProfile()

Plot a CTD Profile

plotScan()

Plot CTD data in a Low-Level Fashion

plotTS()

Plot Temperature-Salinity Diagram

read.ctd()

Read a General CTD File

read.ctd.itp()

Read an ITP-type CTD File

read.ctd.odf()

Read a CTD file in ODF format

read.ctd.odv()

Read an ODV-type CTD File

read.ctd.sbe()

Read a Seabird CTD File

read.ctd.woce()

Read a WOCE-exchange CTD File

read.ctd.woce.other()

Read a WOCE-exchange EXPOCODE File

setFlags(<ctd>)

Set data-quality flags within a ctd object

`[[`(<ctd>)

Extract Something From a CTD Object

`[[<-`(<ctd>)

Replace Parts of a CTD Object

subset(<ctd>)

Subset a CTD Object

summary(<ctd>)

Summarize a CTD Object

woceNames2oceNames()

Translate WOCE Data Names to Oce Data Names

woceUnit2oceUnit()

Translate WOCE units to oce units

write.ctd()

Write a CTD Data Object as a CSV File

Acoustic Doppler data

Functions related to acoustic Doppler instruments and data

ad2cpHeaderValue()

Decode an item from a Nortek AD2CP file header

adp-class

Class to Store adp (ADCP) Data

adp

Sample adp (acoustic-doppler profiler) dataset

adpEnsembleAverage()

Ensemble Average an ADP Object in Time

adp_rdi.000

Sample adp (acoustic-doppler profiler) file in RDI format

as.adp()

Create an ADP Object

beamName()

Get names of Acoustic-Doppler Beams

beamToXyz()

Change ADV or ADP coordinate systems

beamToXyzAdp()

Convert ADP From Beam to XYZ Coordinates

beamToXyzAdpAD2CP()

Convert AD2CP-style adp data From Beam to XYZ Coordinates

beamToXyzAdv()

Convert ADV from Beam to XYZ Coordinates

beamUnspreadAdp()

Adjust ADP Signal for Spherical Spreading

binmapAdp()

Bin-map an ADP object

enuToOther()

Rotate acoustic-Doppler data to a new coordinate system

enuToOtherAdp()

Convert ADP ENU to Rotated Coordinate

handleFlags(<adp>)

Handle Flags in adp Objects

is.ad2cp()

Test whether object is an AD2CP type

plot(<adp>)

Plot an adp Object

read.adp()

Read an ADP File

read.adp.ad2cp()

Read an AD2CP File

read.adp.nortek()

Read a Nortek ADP File

read.adp.rdi()

Read a Teledyne/RDI ADP File

read.adp.sontek()

Read a Sontek ADP File

read.adp.sontek.serial()

Read a serial Sontek ADP file

read.aquadopp()

Read a Nortek Aquadopp File

read.aquadoppHR()

Read Nortek Aquadopp-HR File

read.aquadoppProfiler()

Read a Nortek Aquadopp-Profiler File

rotateAboutZ()

Rotate velocity components within an oce object

setFlags(<adp>)

Set data-quality flags within a adp object

`[[`(<adp>)

Extract Something from an adp Object

`[[<-`(<adp>)

Replace Parts of an ADP Object

subset(<adp>)

Subset an ADP Object

subtractBottomVelocity()

Subtract Bottom Velocity from ADP

summary(<adp>)

Summarize an ADP Object

toEnu()

Rotate acoustic-Doppler data to the enu coordinate system

toEnuAdp()

Convert an ADP Object to ENU Coordinates

velocityStatistics()

Report Statistics of adp or adv Velocities

xyzToEnu()

Convert Acoustic-Doppler Data From xyz to enu Coordinates

xyzToEnuAdp()

Convert ADP From XYZ to ENU Coordinates

xyzToEnuAdpAD2CP()

Convert ADP2CP adp object From XYZ to ENU Coordinates

adv-class

Class to Store adv Data

adv

Sample adv (acoustic-doppler velocimeter) dataset

enuToOtherAdv()

Convert ENU to Other Coordinate

plot(<adv>)

Plot an adv Object

read.adv()

Read an ADV data file

read.adv.nortek()

Read an ADV data file

read.adv.sontek.adr()

Read an ADV data file

read.adv.sontek.serial()

Read an ADV data file

read.adv.sontek.text()

Read an ADV data file

`[[`(<adv>)

Extract Something from an adv Object

`[[<-`(<adv>)

Replace Parts of an ADV Object

subset(<adv>)

Subset an ADV Object

summary(<adv>)

Summarize an ADV object

toEnuAdv()

Convert an ADV Object to ENU Coordinates

xyzToEnuAdv()

Convert an ADP from XYZ to ENU Coordinates

Argo float data and tools

Functions for working with Argo data

argo-class

Class to Store Argo Data

argo

ARGO float dataset

argoGrid()

Grid Argo float data

argoNames2oceNames()

Convert Argo Data Name to Oce Name

as.argo()

Coerce Data Into an Argo Dataset

handleFlags(<argo>)

Handle Flags in ARGO Objects

plot(<argo>)

Plot an argo Object

read.argo()

Read an Argo Data File

`[[`(<argo>)

Extract Something From an Argo Object

`[[<-`(<argo>)

Replace Parts of an Argo Object

subset(<argo>)

Subset an Argo Object

summary(<argo>)

Summarize an Argo Object

Seawater properties

Functions for calculating seawater properties

T68fromT90()

Convert from ITS-90 to IPTS-68 temperature

T90fromT48()

Convert from ITS-48 to ITS-90 temperature

T90fromT68()

Convert from IPTS-68 to ITS-90 temperature

swAbsoluteSalinity()

Seawater absolute salinity, in GSW formulation

swAlpha()

Seawater thermal expansion coefficient

swAlphaOverBeta()

Ratio of seawater thermal expansion coefficient to haline contraction coefficient

swBeta()

Seawater haline contraction coefficient

swCSTp()

Electrical conductivity ratio from salinity, temperature and pressure

swConservativeTemperature()

Seawater conservative temperature, in GSW formulation

swDepth()

Water depth

swDynamicHeight()

Dynamic height of seawater profile

swLapseRate()

Seawater lapse rate

swN2()

Squared buoyancy frequency for seawater

swPressure()

Water pressure

swRho()

Seawater density

swRrho()

Density ratio

swSCTp()

Practical salinity from electrical conductivity, temperature and pressure

swSTrho()

Seawater salinity from temperature and density

swSigma()

Seawater density anomaly

swSigma0()

Seawater potential density anomaly referenced to surface pressure

swSigma1()

Seawater potential density anomaly referenced to 1000db pressure

swSigma2()

Seawater potential density anomaly referenced to 2000db pressure

swSigma3()

Seawater potential density anomaly referenced to 3000db pressure

swSigma4()

Seawater potential density anomaly referenced to 4000db pressure

swSigmaT()

Seawater quasi-potential density anomaly

swSigmaTheta()

Seawater potential density anomaly

swSoundAbsorption()

Seawater sound absorption in dB/m

swSoundSpeed()

Seawater sound speed

swSpecificHeat()

Seawater specific heat Source= http://sam.ucsd.edu/sio210/propseawater/ppsw_fortran/ppsw.f check value: cpsw = 3849.500 j/(kg deg. c) for s = 40 (ipss-78),

swSpice()

Seawater spiciness

swTFreeze()

Seawater freezing temperature

swTSrho()

Seawater temperature from salinity and density

swThermalConductivity()

Seawater thermal conductivity

swTheta()

Seawater potential temperature

swViscosity()

Seawater viscosity

swZ()

Vertical coordinate

Data quality flags

Functions for working with data quality flags

defaultFlags()

Suggest a default flag vector for bad or suspicious data

handleFlags(<adp>)

Handle Flags in adp Objects

handleFlags(<argo>)

Handle Flags in ARGO Objects

handleFlags(<ctd>)

Handle Flags in CTD Objects

handleFlags(<oce>)

Handle flags in oce objects

handleFlags(<section>)

Handle flags in Section Objects

handleFlags()

Handle flags in oce objects

initializeFlagScheme(<ctd>)

Establish a data-quality scheme for a ctd object

initializeFlagScheme(<oce>)

Establish a data-quality scheme for a oce object

initializeFlagScheme(<section>)

Establish a data-quality scheme for a section object

initializeFlagScheme()

Establish a data-quality scheme for a oce object

initializeFlagSchemeInternal()

Establish a data-quality scheme for a oce object

initializeFlags(<adp>)

Create storage for a flag, and initialize values, for a adp object

initializeFlags(<oce>)

Create storage for a flag, and initialize values, for a oce object

initializeFlags()

Create storage for a flag, and initialize values, for a oce object

initializeFlagsInternal()

Create storage for a flag, and initialize values, for a oce object

setFlags(<adp>)

Set data-quality flags within a adp object

setFlags(<ctd>)

Set data-quality flags within a ctd object

setFlags(<oce>)

Set data-quality flags within a oce object

setFlags()

Set data-quality flags within a oce object

All functions

CTD_BCD2014666_008_1_DN.ODF.gz

Sample ctd dataset in odf format

GMTOffsetFromTz()

Determine time offset from timezone

ODF2oce()

Create ODF object from the output of ODF::read_ODF().

ODFListFromHeader()

Create a list of ODF header metadata

ODFNames2oceNames()

Translate from ODF Names to Oce Names

T68fromT90()

Convert from ITS-90 to IPTS-68 temperature

T90fromT48()

Convert from ITS-48 to ITS-90 temperature

T90fromT68()

Convert from IPTS-68 to ITS-90 temperature

abbreviateTimeLabels()

Abbreviate a vector of times by removing commonalities

ad2cpHeaderValue()

Decode an item from a Nortek AD2CP file header

addSpine()

Add a spine to a section object

adp-class

Class to Store adp (ADCP) Data

adp

Sample adp (acoustic-doppler profiler) dataset

adpEnsembleAverage()

Ensemble Average an ADP Object in Time

adp_rdi.000

Sample adp (acoustic-doppler profiler) file in RDI format

adv-class

Class to Store adv Data

adv

Sample adv (acoustic-doppler velocimeter) dataset

airRho()

Air density

amsr-class

Class to Store AMSR-2 Satellite Data

angle2hms()

Convert astronomical angle in degrees to hours, minutes and seconds

angleRemap()

Convert angles from 0:360 to -180:180

applyMagneticDeclination()

Earth magnetic declination

approx3d()

Trilinear interpolation in a 3D array

argShow()

Show an argument to a function, e.g. for debugging

argo-class

Class to Store Argo Data

argo

ARGO float dataset

argoGrid()

Grid Argo float data

argoJuldToTime()

Convert Argo Julian Day (juld) to time

argoNames2oceNames()

Convert Argo Data Name to Oce Name

as.adp()

Create an ADP Object

as.argo()

Coerce Data Into an Argo Dataset

as.cm()

Coerce data into a CM object

as.coastline()

Coerce Data into a Coastline Object

as.ctd()

Coerce data into CTD object

as.echosounder()

Coerce Data into an Echosounder Object

as.gps()

Coerce data into a GPS dataset

as.ladp()

Coerce data into an ladp object

as.lisst()

Coerce Data Into a LISST Object

as.lobo()

Coerce Data into a Lobo Object

as.met()

Coerce Data into met Object

as.oce()

Coerce Something Into an Oce Object

as.rsk()

Coerce Data Into a Rsk Object

as.sealevel()

Coerce Data Into a Sealevel Object

as.section()

Create a Section

as.tidem()

Create tidem object from fitted harmonic data

as.topo()

Coerce Data into Topo Object

as.unit()

Convert a String to a Unit

as.windrose()

Create a Windrose Object

as.xbt()

Create an xbt object

bcdToInteger()

Decode BCD to integer

beamName()

Get names of Acoustic-Doppler Beams

beamToXyz()

Change ADV or ADP coordinate systems

beamToXyzAdp()

Convert ADP From Beam to XYZ Coordinates

beamToXyzAdpAD2CP()

Convert AD2CP-style adp data From Beam to XYZ Coordinates

beamToXyzAdv()

Convert ADV from Beam to XYZ Coordinates

beamUnspreadAdp()

Adjust ADP Signal for Spherical Spreading

bilinearInterp()

Bilinear Interpolation Within a Grid

binApply1D()

Apply a function to vector data

binApply2D()

Apply a function to matrix data

binAverage()

Bin-average a vector y, based on x values

binCount1D()

Bin-count vector data

binCount2D()

Bin-count matrix data

binMean1D()

Bin-average f=f(x)

binMean2D()

Bin-average f=f(x,y)

binmapAdp()

Bin-map an ADP object

bound125()

Calculate a rounded bound, rounded up to mantissa 1, 2, or 5

bremen-class

Class to Store Bremen-formatted Data

byteToBinary()

Format bytes as binary defunct

cm-class

Class to Store Current Meter Data

cm

A Current Meter (cm) Object

cnvName2oceName()

Infer variable name, units and scale from a Seabird (.cnv) header line

coastline-class

Class to Store Coastline Data

coastlineBest()

Find the Name of the Best Coastline Object

coastlineCut()

Cut a Coastline Object at Specified Longitude

coastlineWorld

World Coastline

colormap()

Calculate color map

composite(<amsr>)

Create a composite of amsr satellite data

composite(<list>)

Composite by Averaging Across Data

composite()

Create a composite object by averaging across good data

concatenate(<adp>)

Concatenate adp objects

concatenate(<list>)

Concatenate a list of oce objects

concatenate(<oce>)

Concatenate oce objects

concatenate()

Concatenate oce objects

coriolis()

Coriolis parameter on rotating earth

ctd-class

Class to Store CTD (or general hydrographic) Data

ctd

A CTD profile in Halifax Harbour

ctd.cnv

Sample ctd dataset in .cnv format

ctdDecimate()

Decimate a CTD profile

ctdFindProfiles()

Find Profiles within a Tow-Yow CTD Record

ctdRaw

Seawater CTD Profile, Without Trimming of Extraneous Data

ctdTrim()

Trim Beginning and Ending of a CTD cast

ctimeToSeconds()

Interpret a character string as a time interval

curl()

Curl of 2D vector field

d200321-001.ctd

Sample ctd dataset in .ctd format

d201211_0011.cnv

Sample ctd dataset in .cnv format

dataLabel()

Try to associate data names with units, for use by summary()

decimate()

Smooth and Decimate, or Subsample, an Oce Object

decodeHeaderNortek()

Decode a Nortek Header

decodeTime()

Oce Version of as.POSIXct

defaultFlags()

Suggest a default flag vector for bad or suspicious data

despike()

Remove spikes from a time series

detrend()

Detrend a set of observations

download.amsr()

Download and Cache an amsr File

download.coastline()

Download a coastline File

download.met()

Download and Cache a met File

download.topo()

Download and Cache a topo File

drawDirectionField()

Draw a Direction Field

drawIsopycnals()

Add Isopycnal Curves to TS Plot

drawPalette()

Draw a palette, leaving margins suitable for accompanying plot

echosounder-class

Class to Store Echosounder Data

echosounder

Echosounder Dataset

eclipticalToEquatorial()

Convert ecliptical to equatorial coordinate

enuToOther()

Rotate acoustic-Doppler data to a new coordinate system

enuToOtherAdp()

Convert ADP ENU to Rotated Coordinate

enuToOtherAdv()

Convert ENU to Other Coordinate

equatorialToLocalHorizontal()

Convert equatorial to local horizontal coordinate

errorbars()

Draw error bars on an existing xy diagram

fillGap()

Fill a gap in an oce object

findBottom()

Find the Ocean Bottom in an Echosounder Object

findInOrdered()

Find indices of times in an ordered vector (defunct)

firstFinite()

Get first finite value in a vector or array, or NULL if none

formatCI()

Confidence interval in parenthetic notation

formatPosition()

Format Geographical Position in Degrees and Minutes

fullFilename()

Full name of file, including path

g1sst-class

Class to Store G1SST Satellite-model Data

geodDist()

Compute Geodesic Distance on Surface of Earth

geodGc()

Great-circle Segments Between Points on Earth

geodXy()

Convert From Geographical to Geodesic Coordinates

geodXyInverse()

Inverse Geodesic Calculation

gps-class

Class to Store GPS Data

grad()

Calculate Matrix Gradient

gravity()

Acceleration due to earth gravity

handleFlags(<adp>)

Handle Flags in adp Objects

handleFlags(<argo>)

Handle Flags in ARGO Objects

handleFlags(<ctd>)

Handle Flags in CTD Objects

handleFlags(<oce>)

Handle flags in oce objects

handleFlags(<section>)

Handle flags in Section Objects

handleFlags(<vector>)

Signal erroneous application to non-oce objects

handleFlags()

Handle flags in oce objects

handleFlagsInternal()

Low-level function for handling data-quality flags

head(<oce>)

Extract The Start of an Oce Object

imagep()

Plot an Image with a Color Palette

initialize(<ctd>)

Initialize storage for a ctd object

initializeFlagScheme(<ctd>)

Establish a data-quality scheme for a ctd object

initializeFlagScheme(<oce>)

Establish a data-quality scheme for a oce object

initializeFlagScheme(<section>)

Establish a data-quality scheme for a section object

initializeFlagScheme()

Establish a data-quality scheme for a oce object

initializeFlagSchemeInternal()

Establish a data-quality scheme for a oce object

initializeFlags(<adp>)

Create storage for a flag, and initialize values, for a adp object

initializeFlags(<oce>)

Create storage for a flag, and initialize values, for a oce object

initializeFlags()

Create storage for a flag, and initialize values, for a oce object

initializeFlagsInternal()

Create storage for a flag, and initialize values, for a oce object

integerToAscii()

Decode integer to corresponding ASCII code

integrateTrapezoid()

Trapezoidal Integration

interpBarnes()

Grid data using Barnes algorithm

is.ad2cp()

Test whether object is an AD2CP type

julianCenturyAnomaly()

Julian-Day number to Julian century

julianDay()

Convert a POSIXt time to a Julian day

ladp-class

Class to Store Lowered-adp Data

landsat-class

Class to Store landsat Data

landsat

Sample landsat Dataset

landsatAdd()

Add a Band to a landsat Object

landsatTrim()

Trim a landsat Image to a Geographical Region

latFormat()

Format a latitude

latlonFormat()

Format a latitude-longitude pair

lisst-class

Class to Store LISST Data

lisst

LISST Dataset

lobo-class

Class to Store LOBO Data

lobo

Sample LOBO Dataset

lon360()

Alter longitudes from -180:180 to 0:360 convention

lonFormat()

Format a longitude

lonlat2map()

Convert Longitude and Latitude to X and Y

lonlat2utm()

Convert Longitude and Latitude to UTM

lookWithin()

Look Within the First Element of a List for Replacement Values

lowpass()

Perform lowpass digital filtering

magneticField()

Earth magnetic declination, inclination, and intensity

makeFilter()

Make a digital filter

map2lonlat()

Convert X and Y to Longitude and Latitude

mapArrows()

Add Arrows to a Map

mapAxis()

Add Axis Labels to an Existing Map

mapContour()

Add Contours on a Existing map

mapCoordinateSystem()

Draw a coordinate system

mapDirectionField()

Add a Direction Field to an Existing Map

mapGrid()

Add a Longitude and Latitude Grid to a Map

mapImage()

Add an Image to a Map

mapLines()

Add Lines to a Map

mapLocator()

Locate Points on a Map

mapLongitudeLatitudeXY()

Convert From Longitude and Latitude to X and Y

mapPlot()

Draw a Map

mapPoints()

Add Points to a Map

mapPolygon()

Add a Polygon to a Map

mapScalebar()

Add a Scalebar to a Map

mapText()

Add Text to a Map

mapTissot()

Add Tissot Indicatrices to a Map

matchBytes()

Locate byte sequences in a raw vector

matrixShiftLongitude()

Rearrange areal matrix so Greenwich is near the centre

matrixSmooth()

Smooth a Matrix

met-class

Class to Store Meteorological Data

met

Sample met Object

metNames2oceNames()

Convert met Data Name to Oce Name

moonAngle()

Lunar Angle as Function of Space and Time

numberAsHMS()

Convert a Numeric Time to Hour, Minute, and Second

numberAsPOSIXct()

Convert a Numeric Time to a POSIXct Time

oce-class

Base Class for oce Objects

oce-deprecated

Deprecated and Defunct Elements of the oce package

oce

oce: A Package for Oceanographic Analysis.

oce.as.raw()

Version of as.raw() that clips data

oce.axis.POSIXct()

Oce Version of axis.POSIXct

oce.contour()

Oce Variant of contour

oce.grid()

Add a Grid to an Existing Oce Plot

oce.plot.ts()

Oce Variant of plot.ts

oce.write.table()

Write the Data Portion of Object to a File

oceApprox()

Interpolate 1D Data with UNESCO or Reiniger-Ross Algorithm

oceAxis()

Draw an axis, possibly with decade-style logarithmic scaling

oceCRS()

Coordinate Reference System strings for some oceans

oceColors9B()

Create colors in a red-yellow-blue color scheme

oceColorsCDOM()

Create colors suitable for CDOM fields

oceColorsChlorophyll()

Create colors suitable for chlorophyll fields

oceColorsClosure()

Create color functions

oceColorsDensity()

Create colors suitable for density fields

oceColorsFreesurface()

Create colors suitable for freesurface fields

oceColorsGebco()

Create colors in a Gebco-like scheme

oceColorsJet()

Create colors similar to the Matlab Jet scheme

oceColorsOxygen()

Create colors suitable for oxygen fields

oceColorsPAR()

Create colors suitable for PAR fields

oceColorsPalette()

Create a vector of colors

oceColorsPhase()

Create colors suitable for phase fields

oceColorsSalinity()

Create colors suitable for salinity fields

oceColorsTemperature()

Create colors suitable for temperature fields

oceColorsTurbidity()

Create colors suitable for turbidity fields

oceColorsTurbo()

Create colors similar to the google turbo scheme

oceColorsTwo()

Create two-color palette

oceColorsVelocity()

Create colors suitable for velocity fields

oceColorsViridis()

Create colors similar to the matlab Viridis scheme

oceColorsVorticity()

Create colors suitable for vorticity fields

oceConvolve()

Convolve two time series

oceDebug()

Print a debugging message

oceDeleteData()

Delete Something in an oce data Slot

oceDeleteMetadata()

Delete Something in an oce metadata Slot

oceEdit()

Edit an Oce Object

oceFilter()

Filter a Time Series

oceGetData()

Get Something from an oce data Slot

oceGetMetadata()

Get Something From an oce metadata Slot

oceMagic()

Find the Type of an Oceanographic Data File

oceNames2whpNames()

Translate Oce Data Names to WHP Data Names

ocePmatch()

Partial matching of strings or numbers

oceProject()

Wrapper to rgdal::project()

oceRenameData()

Rename Something in an oce data Slot

oceRenameMetadata()

Rename Something in an oce metadata Slot

oceSetData()

Set Something in an oce data Slot

oceSetMetadata()

Set Something in an oce metadata Slot

oceSmooth()

Smooth an Oce Object

oceSpectrum()

Wrapper to give normalized spectrum

oceUnits2whpUnits()

Translate oce unit to WHP unit

ocecolors

Data that define some color palettes

odf-class

Class to Store ODF Data

parseLatLon()

Parse a Latitude or Longitude String

plot(<adp>)

Plot an adp Object

plot(<adv>)

Plot an adv Object

plot(<amsr>)

Plot an amsr Object

plot(<argo>)

Plot an argo Object

plot(<bremen>)

Plot a bremen Object

plot(<cm>)

Plot a cm Object

plot(<coastline>)

Plot a coastline Object

plot(<ctd>)

Plot a ctd Object

plot(<echosounder>)

Plot an echosounder Object

plot(<gps>)

Plot a gps Object

plot(<ladp>)

Plot an ladp Object

plot(<landsat>)

Plot a landsat Object

plot(<lisst>)

Plot a lisst Object

plot(<lobo>)

Plot a lobo object

plot(<met>)

Plot a met Object

plot(<oce>)

Plot an oce Object

plot(<odf>)

Plot an odf Object

plot(<rsk>)

Plot a rsk Object

plot(<satellite>)

Plot a satellite Object

plot(<sealevel>)

Plot a sealevel Object

plot(<section>)

Plot a section Object

plot(<tidem>)

Plot a tidem Object

plot(<topo>)

Plot a topo Object

plot(<windrose>)

Plot a windrose Object

plot(<xbt>)

Plot an xbt Object

plotInset()

Plot an Inset Diagram

plotPolar()

Draw a Polar Plot

plotProfile()

Plot a CTD Profile

plotScan()

Plot CTD data in a Low-Level Fashion

plotSticks()

Draw a Stick Plot

plotTS()

Plot Temperature-Salinity Diagram

plotTaylor()

Plot a Model-data Comparison Diagram

predict(<tidem>)

Predict a Tidal Signal

preferAdjusted()

Set Preference for Adjusted Values

presentTime()

Get the present time, in a stated timezone

prettyPosition()

Pretty lat/lon in deg, min, sec

`processingLog<-`()

Add an item to a processing log (in place)

processingLogAppend()

Append an item to a processing log

processingLogItem()

Create an item that can be inserted into a processing log

processingLogShow()

Show the processing log of an oce object

pwelch()

Welch periodogram

rangeExtended()

Calculate Range, Extended a Little, as is Done for Axes

rangeLimit()

Substitute NA for data outside a range

read.adp()

Read an ADP File

read.adp.ad2cp()

Read an AD2CP File

read.adp.nortek()

Read a Nortek ADP File

read.adp.rdi()

Read a Teledyne/RDI ADP File

read.adp.sontek()

Read a Sontek ADP File

read.adp.sontek.serial()

Read a serial Sontek ADP file

read.adv()

Read an ADV data file

read.adv.nortek()

Read an ADV data file

read.adv.sontek.adr()

Read an ADV data file

read.adv.sontek.serial()

Read an ADV data file

read.adv.sontek.text()

Read an ADV data file

read.amsr()

Read an amsr File

read.aquadopp()

Read a Nortek Aquadopp File

read.aquadoppHR()

Read Nortek Aquadopp-HR File

read.aquadoppProfiler()

Read a Nortek Aquadopp-Profiler File

read.argo()

Read an Argo Data File

read.bremen()

Read a Bremen File

read.cm()

Read a CM file

read.coastline()

Read a Coastline File

read.coastline.openstreetmap()

Read a Coastline File in Openstreetmap Format

read.coastline.shapefile()

Read a Coastline File in Shapefile Format

read.ctd()

Read a General CTD File

read.ctd.itp()

Read an ITP-type CTD File

read.ctd.odf()

Read a CTD file in ODF format

read.ctd.odv()

Read an ODV-type CTD File

read.ctd.sbe()

Read a Seabird CTD File

read.ctd.woce()

Read a WOCE-exchange CTD File

read.ctd.woce.other()

Read a WOCE-exchange EXPOCODE File

read.echosounder()

Read an Echosounder File

read.g1sst()

Read a G1SST file

read.gps()

Read a GPS File

read.index()

Read a NOAA ocean index file

read.landsat()

Read a landsat File Directory

read.lisst()

Read a LISST File

read.lobo()

Read a LOBO File

read.met()

Read a met File

read.netcdf()

Read a NetCDF File

read.oce()

Read an Oceanographic Data File

read.odf()

Read an ODF file

read.rsk()

Read a Rsk file

read.sealevel()

Read a Sealevel File

read.section()

Read a Section File

read.topo()

Read a Topo File

read.woa()

Read a World Ocean Atlas NetCDF File

read.xbt()

Read an xbt file

read.xbt.edf()

Read a Sippican '.edf' format xbt file

read.xbt.noaa1()

Read a NOAA format for AXBTs

renameData()

Rename items in the data slot of an oce object (deprecated)

rescale()

Rescale values to lie in a given range

resizableLabel()

Provide axis names in adjustable sizes

retime()

Adjust the time within Oce object

rotateAboutZ()

Rotate velocity components within an oce object

rsk-class

Class to Store Rsk Data

rsk

Sample Rsk Dataset

rsk2ctd()

Create a ctd Object from an rsk Object

rskPatm()

Estimate Atmospheric Pressure in Rsk Object

rskToc()

Decode table-of-contents File from a Rsk File

runlm()

Calculate running linear models

satellite-class

Class to Store Satellite Data

sealevel-class

Class to Store Sealevel Data

sealevel

Sealevel data for Halifax Harbour

sealevelTuktoyaktuk

Sea-level data set acquired in 1975 at Tuktoyaktuk

secondsToCtime()

Time interval as colon-separated string

section-class

Class to Store Hydrographic Section Data

section

Hydrographic section

sectionAddStation()

Add a CTD Station to a Section

sectionGrid()

Grid a Section in Pressure Space

sectionSmooth()

Smooth a Section

sectionSort()

Sort a Section

setFlags(<adp>)

Set data-quality flags within a adp object

setFlags(<ctd>)

Set data-quality flags within a ctd object

setFlags(<oce>)

Set data-quality flags within a oce object

setFlags()

Set data-quality flags within a oce object

shiftLongitude()

Shift Longitude to Range -180 to 180

showMetadataItem()

Show metadata item

siderealTime()

Convert a POSIXt time to a sidereal time

snakeToCamel()

Convert each of a vector of strings from SNAKE_CASE to camelCase

standardDepths()

Standard Oceanographic Depths

standardizeLongitude()

Put longitude in the range from -180 to 180

`[[`(<adp>)

Extract Something from an adp Object

`[[`(<adv>)

Extract Something from an adv Object

`[[`(<amsr>)

Extract Something From an amsr Object

`[[`(<argo>)

Extract Something From an Argo Object

`[[`(<bremen>)

Extract Something From a Bremen Object

`[[`(<cm>)

Extract Something From a CM Object

`[[`(<coastline>)

Extract Something From a Coastline Object

`[[`(<ctd>)

Extract Something From a CTD Object

`[[`(<echosounder>)

Extract Something from an Echosounder Object

`[[`(<g1sst>)

Extract Something From a G1SST Object

`[[`(<gps>)

Extract Something From a GPS Object

`[[`(<ladp>)

Extract Something From an ladp Object

`[[`(<landsat>)

Extract Something From a landsat Object

`[[`(<lisst>)

Extract Something From a LISST Object

`[[`(<lobo>)

Extract Something From a LOBO Object

`[[`(<met>)

Extract Something From a met Object

`[[`(<oce>)

Extract Something From an oce Object

`[[`(<odf>)

Extract Something From an ODF Object

`[[`(<rsk>)

Extract Something From a Rsk Object

`[[`(<sealevel>)

Extract Something From a Sealevel Object

`[[`(<section>)

Extract Something From a Section Object

`[[`(<tidem>)

Extract Something From a Tidem Object

`[[`(<topo>)

Extract Something From a Topo Object

`[[`(<windrose>)

Extract Something From a Windrose Object

`[[`(<xbt>)

Extract Something From an xbt Object

`[[<-`(<adp>)

Replace Parts of an ADP Object

`[[<-`(<adv>)

Replace Parts of an ADV Object

`[[<-`(<amsr>)

Replace Parts of an AMSR Object

`[[<-`(<argo>)

Replace Parts of an Argo Object

`[[<-`(<bremen>)

Replace Parts of a Bremen Object

`[[<-`(<cm>)

Replace Parts of a CM Object

`[[<-`(<coastline>)

Replace Parts of a Coastline Object

`[[<-`(<ctd>)

Replace Parts of a CTD Object

`[[<-`(<echosounder>)

Replace Parts of an Echosounder Object

`[[<-`(<g1sst>)

Replace Parts of a G1SST Object

`[[<-`(<gps>)

Replace Parts of a GPS Object

`[[<-`(<ladp>)

title Replace Parts of a ladp Object

`[[<-`(<landsat>)

Replace Parts of a landsat Object

`[[<-`(<lisst>)

Replace Parts of a LISST Object

`[[<-`(<lobo>)

Replace Parts of a LOBO Object

`[[<-`(<met>)

Replace Parts of a met Object

`[[<-`(<oce>)

Replace Parts of an Oce Object

`[[<-`(<odf>)

Replace Parts of an ODF Object

`[[<-`(<rsk>)

Replace Parts of a Rsk Object

`[[<-`(<sealevel>)

Replace Parts of a Sealevel Object

`[[<-`(<section>)

Replace Parts of a Section Object

`[[<-`(<tidem>)

Replace Parts of a Tidem Object

`[[<-`(<topo>)

Replace Parts of a Topo Object

`[[<-`(<windrose>)

Replace Parts of a Windrose Object

`[[<-`(<xbt>)

Replace Parts of an xbt Object

subset(<adp>)

Subset an ADP Object

subset(<adv>)

Subset an ADV Object

subset(<amsr>)

Subset an amsr Object

subset(<argo>)

Subset an Argo Object

subset(<cm>)

Subset a CM Object

subset(<coastline>)

Subset a Coastline Object

subset(<ctd>)

Subset a CTD Object

subset(<echosounder>)

Subset an Echosounder Object

subset(<lobo>)

Subset a LOBO Object

subset(<met>)

Subset a met Object

subset(<oce>)

Subset an oce Object

subset(<odf>)

Subset an ODF object

subset(<rsk>)

Subset a Rsk Object

subset(<sealevel>)

Subset a Sealevel Object

subset(<section>)

Subset a Section Object

subset(<topo>)

Subset a Topo Object

subset(<xbt>)

Subset an xbt Object

subtractBottomVelocity()

Subtract Bottom Velocity from ADP

summary(<adp>)

Summarize an ADP Object

summary(<adv>)

Summarize an ADV object

summary(<amsr>)

Summarize an AMSR Object

summary(<argo>)

Summarize an Argo Object

summary(<bremen>)

Summarize a Bremen Object

summary(<cm>)

Summarize a CM Object

summary(<coastline>)

Summarize a Coastline Object

summary(<ctd>)

Summarize a CTD Object

summary(<echosounder>)

Summarize an Echosounder Object

summary(<gps>)

Summarize a GPS Object

summary(<ladp>)

Summarize an ladp object

summary(<landsat>)

Summarize a landsat Object

summary(<lisst>)

Summarize a LISST Object

summary(<lobo>)

Summarize a LOBO Object

summary(<met>)

Summarize a met Object

summary(<oce>)

Summarize an oce Object

summary(<odf>)

Summarize an ODF Object

summary(<rsk>)

Summarize a Rsk Object

summary(<satellite>)

Summarize a satellite object

summary(<sealevel>)

Summarize a Sealevel Object

summary(<section>)

Summarize a Section Object

summary(<tidem>)

Summarize a Tidem Object

summary(<topo>)

Summarize A Topo Object

summary(<windrose>)

Summarize a windrose object

summary(<xbt>)

Summarize an xbt Object

sunAngle()

Solar Angle as Function of Space and Time

sunDeclinationRightAscension()

Sun Declination and Right Ascension

swAbsoluteSalinity()

Seawater absolute salinity, in GSW formulation

swAlpha()

Seawater thermal expansion coefficient

swAlphaOverBeta()

Ratio of seawater thermal expansion coefficient to haline contraction coefficient

swBeta()

Seawater haline contraction coefficient

swCSTp()

Electrical conductivity ratio from salinity, temperature and pressure

swConservativeTemperature()

Seawater conservative temperature, in GSW formulation

swDepth()

Water depth

swDynamicHeight()

Dynamic height of seawater profile

swLapseRate()

Seawater lapse rate

swN2()

Squared buoyancy frequency for seawater

swPressure()

Water pressure

swRho()

Seawater density

swRrho()

Density ratio

swSCTp()

Practical salinity from electrical conductivity, temperature and pressure

swSTrho()

Seawater salinity from temperature and density

swSigma()

Seawater density anomaly

swSigma0()

Seawater potential density anomaly referenced to surface pressure

swSigma1()

Seawater potential density anomaly referenced to 1000db pressure

swSigma2()

Seawater potential density anomaly referenced to 2000db pressure

swSigma3()

Seawater potential density anomaly referenced to 3000db pressure

swSigma4()

Seawater potential density anomaly referenced to 4000db pressure

swSigmaT()

Seawater quasi-potential density anomaly

swSigmaTheta()

Seawater potential density anomaly

swSoundAbsorption()

Seawater sound absorption in dB/m

swSoundSpeed()

Seawater sound speed

swSpecificHeat()

Seawater specific heat Source= http://sam.ucsd.edu/sio210/propseawater/ppsw_fortran/ppsw.f check value: cpsw = 3849.500 j/(kg deg. c) for s = 40 (ipss-78),

swSpice()

Seawater spiciness

swTFreeze()

Seawater freezing temperature

swTSrho()

Seawater temperature from salinity and density

swThermalConductivity()

Seawater thermal conductivity

swTheta()

Seawater potential temperature

swViscosity()

Seawater viscosity

swZ()

Vertical coordinate

tail(<oce>)

Extract the End of an Oce Object

test_met_csv1.csv

Sample met dataset (CSV format prior to October 2019)

test_met_csv2.csv

Sample met dataset (CSV format as of October 2019)

test_met_xml2.xml

Sample met dataset (XML format as of October 2019)

threenum()

Calculate min, mean, and max values

tidedata

Tidal Constituent Information

tidem-class

Class to Store Tidal Models

tidem()

Fit a Tidal Model to a Timeseries

tidemAstron()

Astronomical Calculations for Tidem

tidemConstituentNameFix()

Change tidal constituent name from T-TIDE to Foreman convention

tidemVuf()

Nodal Modulation Calculations for Tidem

timeToArgoJuld()

Convert time to Argo Julian Day (juld)

titleCase()

Capitalize first letter of each of a vector of words

toEnu()

Rotate acoustic-Doppler data to the enu coordinate system

toEnuAdp()

Convert an ADP Object to ENU Coordinates

toEnuAdv()

Convert an ADV Object to ENU Coordinates

topo-class

Class to Store Topographic Data

topoInterpolate()

Interpolate Within a Topo Object

topoWorld

Global Topographic Dataset at Half-degree Resolution

trimString()

Remove leading and trailing whitespace from strings

unabbreviateYear()

Determine year from various abbreviations

undriftTime()

Correct for drift in instrument clock

unduplicateNames()

Rename duplicated character strings

ungrid()

Extract (x, y, z) from (x, y, grid)

unitFromString()

Decode units, from strings

unitFromStringRsk()

Infer Rsk units from a vector of strings

unwrapAngle()

Unwrap an angle that suffers modulo-360 problems

useHeading()

Replace the Heading for One Instrument With That of Another

usrLonLat()

Calculate lon-lat coordinates of plot-box trace

utm2lonlat()

Convert UTM to Longitude and Latitude

vectorShow()

Show some values from a vector

velocityStatistics()

Report Statistics of adp or adv Velocities

webtide()

Get a Tidal Prediction from a WebTide Database

wind

Wind dataset

window(<oce>)

Window an Oce Object by Time or Distance

windrose-class

Class to Store Windrose Data

woceNames2oceNames()

Translate WOCE Data Names to Oce Data Names

woceUnit2oceUnit()

Translate WOCE units to oce units

write.ctd()

Write a CTD Data Object as a CSV File

xbt-class

Class to Store XBT Data

xbt

An XBT Object

xbt.edf

Sample xbt dataset

xyzToEnu()

Convert Acoustic-Doppler Data From xyz to enu Coordinates

xyzToEnuAdp()

Convert ADP From XYZ to ENU Coordinates

xyzToEnuAdpAD2CP()

Convert ADP2CP adp object From XYZ to ENU Coordinates

xyzToEnuAdv()

Convert an ADP from XYZ to ENU Coordinates