Changelog

Fix a typo in swThermalConductivity doc.

Improve the handling of file encodings.
Make the argo [[ method handle spiciness.
Improve read.adp.ad2cp() extensively, breaking some old behaviours.
Add oceFileTrim(), adpAd2cpFileTrim and adpRdiFileTrim().
Remove renameData(), which had been flagged as defunct in multiple CRAN releases.
Deprecate trimString().

Fix compiler warning of comparing signed and unsigned quantities.

Add gappyIndex().
Fix encoding problems that will occur in the upcoming version of R.

Permit acoustic-Doppler files in excess of 4Gb.

Remove a stray file.

Change mapImage() to use interp instead of akima, as required by CRAN.
Improve read.ctd.sbe() for interpreting Date in headers.
Improve as.ctd() for Argo data.

Add read.ctd.ssda().
Add read.argo.copernicus().
Add sectionSort() parameter decreasing (thanks to M. Renner).
Address unused-variable warnings in C++ code.
Address byte-order mark problem in read.met() tests.
Change most documentation hyperlinks to plain-text.
Change read.met() file encoding; remove sample data.
Speed up some tests.

Remove a link to https://pubs.usgs.gov/pp/1395/report.pdf, which was reported as unreachable during the attempted CRAN submission of version 1.7.1.

Fix error in comparing a class() result with a string, which was reported as an error during the attempted CRAN submission of version 1.7.0.

Fix CRAN-check warning about 2 uninitialized variables on the r-devel-linux-x86_64-debian-gcc test system. (We thank K. Hornik, for an email dated 2022-03-16 notifying us about the problem.)
Fix CRAN-check error on the r-devel-linux-x86_6-debian-clang, r-devel-linux-x86_6-fedora-clang and r-devel-linux-x86_6-fedora-gcc test systems, relating to a byte-order-mark in a test file, which is evidently treated differently on different systems.
Remove a kriging example because it causes CRAN-check problems on r-devel-linux-* machines (but, curiously, no other machines or systems).
Change mapTissot() to trim shapes to earth limits.
Alter this NEWS.md file so pkgdown::build_news() will notice the subsections.
Add read.ctd.aml().
Change read.met() to handle a new encoding argument.
Fix drawPalette() to obey the at and labels arguments.
Fix plot,ctd-method() to recognize which=13 for spice.

Remove a journal link that has become unavailable.
Fix “length_1” error (thanks to B. Ripley for the heads-up).

Extend read.odf() to store ODF header in metadata.
Remove makeSection(), after its deprecate/defunct period ended.
Make defunct: addColumn(), byteToBinary(), ctdAddColumn(), ctdUpdateHeader(), findInOrdered(), mapZones(), mapMeridians(), oce.as.POSIXlt(), and oce.magic()
Add as.tidem().
Extend read.odf() to handle multiple NULL_VALUEs.
Improve handleFlags().
Add rotateAboutZ().
Add concatenate().
Add read.woa().
Extend colormap() to include colfunction in return value.

tidem() permits inferred constituents
tidem() follows T_TIDE phase convention
adorn argument removed from some plot functions (after being defunct 1+ year)
deprecate findInOrdered()

plot,section-method() can use external bathymetry
lowpass() added
ctdTrim() can isolate upcasts
deprecate byteToBinary()
address a CRAN NOTE about UTF-8 strings in data

adpEnsembleAverage() added
mapCoordinateSystem() added
woce-exchange missing-value inference
woce-exchange autodetection, plus read all data types
download.amsr() updated for data-server change
download.met() added
as.ctd() can specify columns within argo data
read.adp.rdi() handles more file types and larger RDI files
read.odf() handles contradictory metadata better
oce.as.POSIXlt() deprecated
oceSetData() handles units better
address R_registerRoutines build-time warning
fix memory-usage error in coastlineCut()

remove observatory object type (changed format, seldom-used type)
remove pangaea object type (undocumented format, seldom-used type)
improvements for BioArgo data
Spanish translation by Pablo Valdés
make read.gps() handle more files
deprecate ctdAddColumn() and ctdUpdateHeader()
download.topo() added and read.topo() updated to handle new formats
download.amsr() added
composite() added
addColumn() marked as deprecated
read.cm.s4() reads all data in file
as.cm() added
read.odf() handles Aanderaa current meter data
mapPlot() and mapAxis() get cex.axis parameter
subset(amsr) added; various other amsr improvements

deprecate ‘adorn’ in plot functions
make read.ctd() obey missingValue (renamed)
improve map projections
add renameData()
improve support for SBE files
remove is.beam(), is.xyz(), is.enu() and coordinate(), since x[["coordinate"]] now permits these simply
replace several function-style accessors with [[ style
fix test-suite error relating to an rgdal change
add handleFlags() as generic plus specifics for ctd and argo classes
use S4 documentation, e.g. ?'plot,ctd-method' instead of ?plot.ctd
add subset(argo, "adjusted")
make read.argo() read all documented data and metadata fields
add trimString()

improve plot.coastline() and mapPlot()
add support for G1SST satellite
all objects now have metadata items for units and flags
ctdTrim() method renamed: old A and B are new A; old C is new B
support more channels and features of rsk files
as.adp() added
convert argo objects to sections
makeSection() deprecated; use as.section() instead
read.adp.rdi() handles Teledyne/RDI vsn 23.19 bottom-track data
geodXyInverse() added; geod functions now spell out longitude etc
read.odf() speeded up by a factor of about 30
add colour palettes from Kristen Thyng’s cmocean Python package
as.oce() added
rename 'drifter' class as 'argo' to recognize what it actually handles
add oceColorsViridis()
interpBarnes() has new argument 'pregrid'
binMean2D() has new argument ‘flatten’
data(topoWorld) now has longitude from -179.5 to 180
ODF2oce() added
read.odf() handles more data types
read.adp.rdi() reads more VmDas (navigational) data
ITS-90 is now the default temperature unit
ctd objects can have vector longitude and latitude
logger class renamed to rsk
bremen class added
coastlineCut() added
rgdal package used instead of local PROJ.4 source code
mapproj-style map projections eliminated

remove an exit() call in a C function

cite PROJ.4 contributors in DESCRIPTION
address package-build warnings; improve DESCRIPTION (thanks, BR)

plot.echosounder() gets new argument ‘drawPalette’
data(landsat) taken from ocedata (and shrunk)
data(nao) and data(soi) moved to ocedata
mapTissot() added
read.logger() with ctd-type data infers salinity if necessary
ctdTrim() can have “method” as a function
as.topo() can convert “bathy” objects from the marmap package
"+.section" renamed sectionAddStation()
oceApprox() renamed oce.approx(), with an alias for compatibility
oce.grid() added
"tdr" class renamed "logger"
swCSTp() added
swConductivity() now swThermalConductivity(); using Caldwell (1974).
many sw() functions handle eos=“gsw”
library(gsw) replaces teos()
curl() added
handle new NOAA ascii topography dataset type
mapGrid() added
data(soi) moved to ocedata package
lonlat2map() added
map2lonlat() made more accurate
permit proj4 style map projections
landsat-7 (and possibly 4 and 5) support
landsat decimation/plotting improvements
drifterGrid() added
mapDirectionField() added
mapArrows() added
read.index() added
utm2lonlat() and lonlat2utm() added
data(met) changed to time of Hurricane Juan

fix compile-time warning
colormap() added, and functionality added to imagep() and drawPalette()
imagep() and drawPalette() new arg. ‘axisPalette’ (suggested C. Richards)
drawPalette() has new args: plot, pos, levels, and cex.axis
ctdDecimate() permits user-supplied method function
data(nao) added; data(soi) updated, and names improved in latter
landsat support added
plotProfile() and plotTS() get new argument ‘pt.bg’
plot.section() grids the data if needed
rename 'sealevelHalifax' dataset as 'sealevel'
translate some axis names (Spanish, French, German and Mandarin)
plotProfile() now has ytype="depth"
mapImage() and friends now demand a map exists first
runlm() added
mapScalebar() added
subset.topo() added
read.topo() now handles GEBCO netcdf files
decimate() now handles topo objects
reverse oce.colorsGebco colours for water
drawIsopycnals() and plotTS(): improve isopycnal labels
ctdDecimate() handles new method ‘unesco’
coastline improvements (now 3 resolutions)
webtide() improvements
read.observatory() added
read.ctd.itp() added
mapImage() speeded up (60X in 1deg SST example)
binApply1D() and binApply2D() added
binCount1D(), binMean1D(), binCount2D(), and binMean2D() added
numberAsHMS() added
gps data type added (provisionally)
various functions: reorder arguments putting longitude before latitude
magneticField() replaces magneticDeclination()
ungrid() added
mapPlot(): improve zone and meridian aesthetics
detrend() returns list with detrend vector and coefs
decodeTime() improvements
interpBarnes() has new argument ‘trim’
standardDepths() added
mapLongitudeLatitudeXY() added
read.ctd.woce() now accepts a format used once by Arctic scientists
swRrho() added
plotProfile() now accepts type=“o”
read.adv.nortek(): read salinity
ctdDecimate(): fix bug for NULL columns [issue 327]
plot.section() now chooses best coastline file
swPressure() added
ctdFindProfiles() added
as.ctd(): new arguments filename etc
remove oceBisect(), which merely reproduces uniroot()
move large/specialized datasets to library(ocedata)

prepare for an upcoming release of R-devel

move vignette source directory

numberAsPOSIXct() now handles types “sas” and “spss”
data(turbulence) added
plot.echosounder(): use white for below-threshold values
plot.echosounder(): add arg ‘beam’ to e.g. display Sv
read.echosounder(): handle dual-beam and split-beam data
read.echosounder(): decode bottom-pick
swSoundAbsorption()
read.adp() doc improved regarding variable orientation of RDI files

improve line breaks in some help pages (thanks, B. Ripley)

mapPlot() uses … graphical parameters (e.g. cex) in labelling axes
fix recent bug in reading CNV files (issue 318)
plotTS(...,mar=NULL) now avoids setting par(mar)

fix memory error in teos handler (thanks, B. Ripley)

make ctdTrim() work in R 3.0
support for adp vmdas nav data (coded by Clark Richards)
approx3d(): added
drawPalette(): new arg ‘fullpage’
plot.lobo(): add ‘which’ argument
read.coastline.openstreetmap() added
data(levitus) added
plot.coastline() gets new arguments ‘projection’ etc to use mapPlot()
mapContour() permits first argument to be a ‘topo’ object
mapPlot() gets new arguments axes, bg, fill, and drawBox

address compilation error on Windows-64 platform
make some long-running operations more interruptible
oceApprox(): permit equal x values [issue 279]

halve package check time

as.section() added
add data(endeavour)
add map projections, with provisional functions mapPlot() etc
plot.ctd(): add argument ‘add’
add crude mapping support
interpBarnes(): add args ‘xgl’ and ‘ygl’
read.section(): add ‘directory’ argument
sectionSmooth(): add ‘barnes’ method
oce.plot.ts() and oce.axis.POSIXct(): add tformat argument
read.aquadopp() and cousins added [issues 253 and 258]
read.ctd() guesses waterDepth if not supplied [issue 253]
plotTS(): extend isopycnal range [issue 252]
plot.section() contouring improved
data(oceans) added
data(papa) added
fillGap() works on matrices as well as vectors
read.lobo() is more flexible on column names
imagep(..., axes=FALSE): no longer plots axis box [issue 249]
oce.plot.ts(): alter time auto-ranging method
oceBisect(): increase generality of function whose root is sought
plotTS(): clean axes after isopycnals drawn
teos10: update test values (with help from PB)
read.adp.nortek(): handle missing ‘to’ argument as documented
beamUnattenuateAdp() renamed beamUnspreadAdp()
plotTS() and plotProfile(): permit type=‘n’
plotProfile(ytype='z'): fix bug in y label
improve error message if TEOS-10 is missing

example(riley): remove error in R-devel
plot.ctd(...,which=7) improvement
swSCTp(): accept conductivity in mS/cm and S/m
as.ctd(): accept TEOS-10 values SA and CT
make TEOS routines more resistant to unphysical values

remove unwanted files during build process

pwelch(): fix bug in frequency
tidem(): add argument ‘regress’
rename oce.plot.sticks() as plotSticks(); delete stickplot()
use S4 style for all plot() methods
data(giss) added
data(topo2) added
plotPolar() added
oce.magic() new name for magic(); renamed oceMagic() in 0.9-15
errorBars() added
numberAsPOSIXct() add a leap second for July 2012

plot.topo(): automatic cut-point shift
add support for Nortek aquadopp-profiler instruments
oce.contour() added
lisst class added
plotTaylor() added
oce.as.raw() added
binmap() added

make the newly-added TEOS-10 functions compile on Windows

data(cm) added
plot.coastline(): improve argument ‘geographical’
add prettyPosition()
add grad()
add (preliminary) support for TEOS-10, installed separately
add integrateTrapezoid()
plotTS(): add argument teos
add teos() as an interface to the TEOS-10 library
add moonAngle() plus other astronomy functions, e.g. julianDay()

plotInset(): remove ‘bg’ and ‘fg’ arguments
plotTS(): add ‘bg’ argument
rename ‘dt’ object and functions to ‘tdr’
plotTS(): add argument ‘inset’
read.adp.rdi(): fix a bug in bottom-tracking; add soundSpeed vector
data(echosounder) created
formatPosition() created
plot(echosounder): new arguments atTop and labelsTop
adp objects now also hold ‘percent good’ for RDI instruments
plot.drifter(): improve multi-panel plots
imagep(): add argument ‘missingColor’
imagep() and drawPalette(): add arguments ‘labels’ and ‘at’

imagep(): permit POSIXt type for zlim

reconstruct data(ctd) so plot will focus maps better
plotInset() added
grid() works for oce-based time axes
imagep(…, filledContours): obey ylab argument
subset(): permit subsetting ADP by pressure
oce.plot.ts(): obey arguments xaxt and yaxt
improve support for shapefile coastlines

replace ‘center’ argument for plotting topography and coastline with clatitude and clongitude
add ‘echosounder’ class
fullFilename(): handle URLs properly
ADV objects: add access to slow variables (e.g. headingSlow)

add ‘met’ class
subset.oce() handles section objects
draw.section(): permit xtype=“latitude” or “longitude”
imagep() has drawPalette=“space” option

fix bug in read.coastline(), reversing lon and lat [issue162]
fix bug in S4 adp validity checker
geodDist(): add argument ‘alongPath’
remove compilation warning about doc for summary.ctd()

switch to S4 classes, and add new accessors and ‘show’ functions.
add support for RBR ‘rsk’ files
plot.section() now uses ‘col’ if supplied

improve oce.colorsJet()
improve plotProfile() vertical range with missing data
add data(drag)
plotProfile() and plot.ctd(): add xtype=“spice”
add data(geosecs235)
plotProfile() and plot.ctd(): add argument ‘keepNA’
as.ctd(): add arguments ‘other’ and ‘missingValue’
read.lobo(): tolerate more formats, including missing velocities
add data(schmitt)
add accessor spice()
handle O2 and nutrients in CTD data and sections
swSCTp(): use surface pressure as a default
plotTS(): add arguments inSitu and referencePressure
plotTS(): handle section objects
fix bugs reported in issues 150, 151, 153, 155, 156
imagep(): change default drawContours to FALSE

add ‘adv’ dataset
generalize swN2() by adding new arg ‘derivs’
oce.plot.ts() gets new arg ‘axes’
add accessor distance()
rename to plotTS() and plotScan() to avoid S3 check warnings
switch makeFilter’s argument asKernel to TRUE

add support for ARGO drifters
latitude() and longitude(): new argument to repeat byDepth
addCtdColumn(): replace if column already exists
add CTD accessors for lat, lon, pressure, salinity, temperature

plot.sealevel(): only show 3 panels, for clarity
plot.ctd(): add argument ‘type’
imagep(): handle x, y, and z as image() does
oce.plot.ts(): inferred ylim matches data range within provided xlim
read.adv.nortek(): handle extra analog data
add CTD accessors longitude(), latitude(), time(), elevation(), etc

add read.oce.odf()
add findInOrdered
generalize tidem() argument list
read.adv.nortek(): handle burst-mode data
add datasets wilson, redfieldNP, redfieldNC, redfieldPlankton, and riley
change data(ctd) to be derived from data(ctdRaw)
change to monitor=FALSE for all reading functions
add accessor functions heading(), latitude(), longitude(), pitch(), pressure(), processingLog(), roll(), salinity(), temperature(), time(), and velocity()
rename history as processingLog
flatten data objects to be 1 level thick (for future matlab exports)
add threenum() added, and use it in all summaries (for speed)

head.adp() added
tail.adp() added
extract() added

velocityStatistics() added
new names: oceApprox() integerToAscii() rangeLimit() ctdRaw
topoInterpolate() added
numberAsPOSIXct(): add type ‘argos’
rename beamAttenuateAdp() as beamUnattenuateAdp()

camel-case function and argument names (and the NEWS file)

add binAverage()
fillGap(): add ‘rule’ argument (analogous to same for approx())
add rescale()
read.pt(): fix timing error; use as.pt() to create return value
add as.pt()
read.adp.rdi() uses checksums
number.as.POSIXct(type=“gps”): account for leap seconds

remove warning that occurs for R 2.13.0 (alpha)
number.as.POSIXct(): accept GPS times
rename e.g. adv.2enu() as to.enu.adv()
speed up conversion of ADP and ADV to enu by more than a factor of 10
change RDI coordinate handling
rename match.bytes() as matchBytes()
add drawPalette()
remove matlab2POSIXt(), now a sub-case of number.as.POSIXct()
number.as.POSIXct(): added
oceBiset(): added
despike(): add argument ‘action’
detrend(): added
read.adp.sontek(): handle PCADP type
read.adp.sontek.serial(): added
read.section(): handle WOCE quality flags for salinity
retime(): added
read.adv.sontek.serial(): correct error in class of ‘a’ and ‘c’
despike(): use string value for argument ‘method’
logger.toc(): fix bug in discovering files ranging over days
as.ctd(): make temperature and salinity into vectors, if not already
plot.TS(): add argument ‘use.smoothScatter’
oce.debug(): flush the console after printing a message
sw.theta(): rename the method possibilities, to lower case
in some sw functions, rename ‘pref’ as ‘reference.pressure’
read.ctd(): fix bug in getting start.time for some time formats
pwelch() added
plot.sealevel(): make y axis obey range in data subset, if xlim is given
adp.2enu() added
coastline.world: improve resolution by a factor of 4 or so
read.ctd.woce(): infer water depth as max(pressure) if not in header
section.smooth(): handle misordered stations; handle missing values better
plot.section(): allow strings for ‘which’; improve contouring
plot.ctd() and plot.profile(): add ‘use.smoothScatter’ argument
coriolis(): improve omega value

add despike()
add range.limit()
add unabbreviate.time()
add support for bottom-tracking RDI ADCPs
add support for interocean ‘s4’ current meters
add unwrap.angle()
read.adv.nortek(): detect the velocity range
add processing.log.add(), an alternative to processing.log.append()
plot.ctd(): add more plot types; which=9 for salinity, not density
as.ctd(): improve flexibilty
predict.tidem(): add ‘newdata’ argument
adv.2enu() added
adp.xyz2enu(): make it correct for heading.bias
make.filter(): can now produce tskernel type
improve (but temporarily limit) fill.gap
plot.adp(): add ‘use.layout’ argument
window.oce() added
make objects remember full filename, not just local filename (issue8)
plot.tidem(): remove argument ‘plot.type’, using ‘which’ instead
read.pt(): add arguments from, by, and to
fix issue 57 [read.adp.rdi() read the heading incorrectly]
add “rr” method to ctdDecimate()
oceApprox() added
topoWorld dataset added
plot.ctd(): by default, make coastlines extend to box boundaries
reformulate sun.angle in R
fix google-code issue 56 [plot.topo() should accept land.z=NULL]
fix google-code issue 55 [plot.topo() could go past poles]
fix google-code issue 54 [plot.topo() was resetting par() on exit]
fix google-code issue 53 [interp.barnes() gives poor error msg for mismatched x and y]
fix google-code issue 52 [plot.section() draws incorrect bottom shape]

add sun.angle [not tested yet; needs R reformulation]
fix google-code issue 51 [summary.section() does not report water depth]
fix google-code issue 50 [non-bug relating to sun elevation]
fix google-code issue 49 [demo(TS) broken]

fix google-code issue 48 [oce.plot.sticks() ignored page ratio]
fix google-code issue 47 [cannot read new MEDS sealevel format]

add data(RRprofile)
to plot.TS(), add arguments lwd.rho and lty.rho

refactor adp code wrt transformation matrices
add matrix.smooth()
improve labels for oce.axis.POSIXct()
set default for ‘debug’ argument to getOption(“oceDebug”) in all functions
plot.profile(): add argument ytype; change ‘type’ to ‘xtype’
add swZ()
add oce.smooth()
add read.adv(), etc., supporting Nortek and Sontek devices
add read.adp(), etc., supporting Nortek, RDI and Sontek devices
add oce.plot.ts()
add imagep()
add bcd2integer()
add matlab2POSIXt()
to most plot functions, add ‘mgp’ and ‘mar’ arguments
plot.pt(): add plim and Tlim arguments
gravity(): give default for latitude argument
plot.sealevel(): remove argument focus.time and add argument which
rename tdr functions as pt, to reflect oral convention
add geod.xy()
add argument ‘mgp’ to all plotting functions
use abbreviations for axis names if space is tight
add argument ‘adorn’ to all plot() functions
add oce.colorsTwo(), oce.colorsJet(), and oce.colorsPalette()
add byte2binary()
add “lty.grid” to all CTD plotting functions
add “+.section”, a more convenient way to build sections from stations
rework summary() for all existing objects
as.sealevel(): rename sampling.interval as deltat

sw.N2(): make it tolerate NAs; adjust df to make result smoother
add makeFilter()
add decimate(), which may eventually replace ctd.decimate()
read.tdr(): handle 5-column data files; add tz argument
plot.profile(): add types sigma+dpdt and sigma+time
ctdTrim(): add pmin parameter
plot.ctd(): add Slim, Tlim, plim, lonlim, latlim args; add maps
add coastline.sle dataset
plot.TS(): fix isopycnal labels for fresh water; add args Slim, Tlim
read.ctd(): make it understand another SBE format
add parseLatlon()
oce.edit(): add argument ‘action’
add oce.write.table()
add fillGap()

add addColumn()
add undriftTime()
add tdrPatm()
make readTdr() gather serial no. info; show this on plot.pt()
switch to recommended version-number format
remove section.subset(), replaced by subset()
improve log items in functions that read and assemble oce objects http://code.google.com/p/r-oce/issues/detail?id=38
add subset.oce()
add header()
add argument ‘which’ to read.rbrdtr()
make read.rbrdtr() understand headers better
add arguments ‘xtype’ and ‘ytype’ to plot.section()
improve accuracy of bottom drawn by plot.section()
add section.smooth()
fix bug making section.smooth() fail if <4 good data at a level http://code.google.com/p/r-oce/issues/detail?id=36
fix bug making summary.ctd() fail for results of section.smooth() http://code.google.com/p/r-oce/issues/detail?id=34
fix bug making sw.dynamic.height() choke on empty stations http://code.google.com/p/r-oce/issues/detail?id=33
fix bug making plot.section() die if x is unordered http://code.google.com/p/r-oce/issues/detail?id=36
rename rbrpt functions to tdr functions, improving generality

add argument “src” to as.ctd() http://code.google.com/p/r-oce/issues/detail?id=22
plot.section() RHS axis needs tics http://code.google.com/p/r-oce/issues/detail?id=32
trim axis whitespace in plot.profile() and plot.TS() http://code.google.com/p/r-oce/issues/detail?id=31
make read.oce() understand WOCE section type http://code.google.com/p/r-oce/issues/detail?id=30
speed up swSpice() http://code.google.com/p/r-oce/issues/detail?id=29
add read.pt(), summary.pt(), plot.pt(), and ptTrim()
make plot.TS() isopycnal label size be same on top and right sides http://code.google.com/p/r-oce/issues/detail?id=26
add lwd argument to plot.profile()
give plot.section() ability to control contour levels and labels
give plot.section() tics for station-location

plot.topo() narrows autoscale to xlim-ylim region, if provided
add plot.ctd() ‘textpanel’ option, and put the profiles in the same row
fix bug in plot.profile() to let it take Slim,…, as args http://code.google.com/p/r-oce/issues/detail?id=25
fix bug in plot.profile() font size http://code.google.com/p/r-oce/issues/detail?id=24
fix bug in plot.profile(type=“S_T”) positioning http://code.google.com/p/r-oce/issues/detail?id=23
fix bug in section plot (bottom was missing) http://code.google.com/p/r-oce/issues/detail?id=21
fix bug in size of salinity axis label for plot.ctd()
use pch=21 for TS plots (so data density is more visible)

add interp.barnes()

fix bug in makeSection (ignored the list, if a list provided) http://code.google.com/p/r-oce/issues/detail?id=18&q=label:Type-Defect
add oce.edit(), later renamed oceEdit()
add topoMaritimes dataset
add read.topo(), plot.topo(), and summary.topo()
add gebcoColors() … renamed oce.colorsGebco() in version 0.1.77
make plot.section() check that pressures coincide

plot.TS(): make isopycnal list work better for nearly-fresh water
trimCtd(): improve equilibration-phase deletion
read.ctd(): handle cases without cruise information or scan column
permit setting xlab and ylab in plot.TS()
make processing log timestamps be in GMT
add as.windrose() and plot.windrose()
add sealevel.tuk sea-level dataset
add tidem(), predict.tide(), summary.tide(), plot.tide(), data(tidedata)
establish a uniform form for objects created by “read” and “as”
let swRho() and similar functions take a ctd object as a single argument
add swDynamicHeight()
make section.grid() and ctd.decimate() extrapolate to surface
add summary.oce()
make all objects inherit from a new class “oce”
fix google-code issue 12: read.sealevel() had a hard-wired filename

modify documentation slightly
start a migration to more uniform object structures
rename as.CTD() to as.ctd(), to make it consistent with similar functions
add read.section()
add sectionGrid(), which only grids in p at the moment
add a03 dataset (renamed ‘section’ in 0.9-13)
fix SF bug 1833719: warnings from read.ctd()
fix google-code issue 8: read.coastline() not producing data
improve ability of trimCtd() to ignore spurious initial data
add “connectPoints” option to plot.TS()
add “station” item to “ctd” object
change as.CTD() to produce sigma.theta instead of sigma

add coastline.world; increase resolution of coastline.maritimes
plot.TS() no longer rotates the RH margin isopycnal labels

allow swRho() and similar take matrices as arguments for S, T, etc

fix bug in plot.TS() that prevented it from showing some isopycnals

switch to UNESCO formulation for sw potential temperature by default
prevent warnings with C90 compiler on some machines

add read.oce(), a generic function for reading several oceanographic files
make read.ctd() understand WOCE-exchange files
make read.sealevel() understand comma-separated data from MEDS
make plot.sealevel() skip spectral graphs if timeseries has NA values
improve aesthetics of plot.ctd()
extend plot.sealevel() by adding focus.time argument
add ctdDecimate()
add oce.as.POSIXlt()
add latlonFormat(), latFormat(), and lonFormat()
add as.coastline()
add make.section()
add summary.section()
add plot.section()
add data(section)

add swSoundSpeed()

add historyAppend() (later named processingLogAppend()) and related code
improve ctdTrim()

add rudimentary read/summary/plot functions for lobo datasets

add vignette; address some build-stage warning messages

set up data files to permit latin1 encoding of some content

rename all seawater-related functions to e.g. swTheta(), to allow for atmospheric analogs

make as.CTD() accept length(p)=1, e.g. for surface plots

make read.coastline() handle S files

keep swTheta() from complaining if length(p) = 1

add swAlpha() and swBeta()

add swAlphaOverBeta()

document the use of df in swN2(), plot.ctd(), etc.

permit swRho() (and similar) to take NAs in args (bug B32)

permit swRho() and descendants to take scalar pressure.

add as.CTD()

add “UNESCO1983” formulation to swTheta() as an alternative

speed up swTheta() by moving vector work from R to C

make geodDist() accept a vector for location 1 and a scalar for location 2

make read.coastline() understand matlab and Splus formats

make plot.coastline() scale lat and lon correctly

add read.coastline(), summary.coastline(), and plot.coastline()

add as.sealevel()

add read.sealevel(), summary.sealevel(), and plot.sealevel()

add name option to plot.ctd.scan()

add lapse.rate()

fix B27 (header not updated for columns added during read.ctd)

rename as ctdTrim()
rename to ctdWrite()

add write.ctd()
add ctdAddColumn()
add ctdUpdateHeader()

add plot.ctd.scan()

make read.ctd() calculate S if missing but C, T, and p are given
add swSCTp()

add swConductivity()

rename to swRho()

use namespace

add oce.viscosity()

fix B23 (not done yet)
fix B22 (not done within oce; done at system level)

add pressure method to trimCtd()

vectorize swRho() since it was too slow on large datasets

make demo(oce.ctd) print data

fix some documentation errors that the 2.0.0 CHECK noticed

profiles have correct y-axis
OSX port, but must first do e.g. export PKG_LIBS=“-L/sw/lib”

OSX port (you must first do export PKG_LIBS=“-L/sw/lib”)

add trim.ctd()

permit lat/lon with the “N”-type indicator at start

fix bug B16 (label the isopycnals on TS diagram)

make read.ctd handle more file types

add oceCoriolis, oceDepth, oceGravity, oceTFreeze

add oceSpecificHeat oce.N2; fix bug B18

get data(ctd) working

add oceSTRho

fix bug B15 (maybe)

add oceTSRho

fix bugs B10, B11, and B13

fix bugs B6, B7, and B12

add geodDist()
add plot.ctd(), which is rudimentary for now
fix bug B8

add spice() function

permit all eos functions to handle missing values
fix bug B4

add summary(ctd) method.
make read.ctd() return an object of type ctd.
get tests/ working.

create tests/oce.test1.R

add oceSigma(), oceSigmaT(), and oceSigmaTheta()

permit various EOS functions to handle lists
fix bug B3

add ocerho()

fix file-path bug
fix bug B2

add theta()
fix bug B1

add read.ctd()

oce 1.7.10

oce 1.7.9

oce 1.7.8

oce 1.7.7

oce 1.7.6

oce 1.7.5

oce 1.7.4

oce 1.7.3

Version 1.7.2

Version 1.7.1

Version 1.7.0

Version 1.6.1

Version 0.9-24

Version 0.9-232018-01-28

Version 0.9-222017-08-28

Version 0.9-212017-03-30

Version 0.9-202016-11-19

Version 0.9-192016-07-08

Version 0.9-182016-02-12

Version 0.9-172015-05-22

Version 0.9-162015-05-21

Version 0.9-15

Version 0.9-142014-05-19

Version 0.9-132014-01-29

Version 0.9-122013-07-05

Version 0.9-11

Version 0.9-102013-05-19

Version 0.9-9

Version 0.9-82013-04-25

Version 0.9-7

Version 0.9-62012-12-16

Version 0.9-52012-12-15

Version 0.9-4

Version 0.9-32012-09-04

Version 0.9-22012-07-29

Version 0.9-1

Version 0.8-102012-06-12

Version 0.8-92012-05-25

Version 0.8-82012-05-23

Version 0.8-72012-04-05

Version 0.8-62012-03-04

Version 0.8-5

Version 0.8-42011-12-19

Version 0.8-32011-11-18

Version 0.8-22011-11-03

Version 0.8-12011-10-26

Version 0.7-12011-10-07

Version 0.6-12011-09-01

Version 0.5-12011-07-26

Version 0.4-12011-07-23

Version 0.3-12011-06-22

Version 0.2-3

Version 0.2-22011-05-09

Version 0.2-12011-04-28

Version 0.1-83

Version 0.1-822011-03-21

Version 0.1-812010-10-18

Version 0.1-802009-11-05

Version 0.1-792009-10-26

Version 0.1-782009-10-02

Version 0.1-772009-09-13

Version 0.1-762009-03-02

Version 0.1-752009-01-06

Version 0.1.742008-11-18

Version 0.1.732008-09-14

Version 0.1.722008-06-09

Version 0.1.712008-04-14

Version 0.1.702008-04-01

Version 0.1.692007-12-14

Version 0.1.68

Version 0.1.672007-10-21

Version 0.1.66

Version 0.1.65

Version 0.1.642007-07-17

Version 0.1.632007-06-02

Version 0.1.622007-05-29

Version 0.1.61

Version 0.1.60

Version 0.1.592007-05-20